Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0510
(770 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0823 + 21765960-21766064,21766166-21766327,21766616-217667... 85 4e-17
05_01_0382 + 2985526-2986659 32 0.58
05_01_0139 + 929343-930188 31 1.0
06_03_0722 - 23869981-23870250 31 1.3
09_06_0120 - 20973635-20974879 30 2.4
08_01_0987 + 9979651-9979746,9979818-9980058,9980947-9981090,998... 30 2.4
02_05_0902 + 32620668-32621209,32621847-32622258,32622471-326226... 29 3.1
05_01_0380 + 2978256-2979284 29 4.1
02_05_0184 + 26543156-26544019 29 4.1
09_04_0097 - 14573499-14574110,14574977-14575017,14575424-145756... 29 5.4
05_05_0053 - 21931601-21931729,21931815-21932087,21932985-219330... 29 5.4
03_04_0098 - 17275045-17275665 29 5.4
01_06_1815 - 40064351-40064887,40064987-40065634,40065834-400658... 29 5.4
03_06_0340 + 33252677-33252864,33253086-33254442,33254565-332546... 28 9.5
>07_03_0823 +
21765960-21766064,21766166-21766327,21766616-21766741,
21766831-21766956,21767519-21767698,21768204-21768452
Length = 315
Score = 85.4 bits (202), Expect = 4e-17
Identities = 33/85 (38%), Positives = 55/85 (64%)
Frame = +3
Query: 3 SFDQYATEVKSGRLEWSPVHKSAKFWRENAARLNERGQELLRTLVHLLEKSRDPVVLAVA 182
SF++Y +V G L+WSP+HK FWREN E ++LR L+ +++ S D LAVA
Sbjct: 195 SFEKYKQQVLLGHLDWSPMHKDPSFWRENINNFEENDFQILRVLMTIIDTSADTTALAVA 254
Query: 183 CYDIGEYVRHYPRGKHIIEQLGGKN 257
CYD+ ++++++P G+ ++ L K+
Sbjct: 255 CYDLSQFLQYHPSGRIVVADLKAKD 279
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 257 RVMYLLSHDDPNVRYEALLAVQKLMV 334
RVM L++H++ VR ALL VQ+L +
Sbjct: 280 RVMKLMNHENAEVRKNALLCVQRLFL 305
>05_01_0382 + 2985526-2986659
Length = 377
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -3
Query: 228 VCRAD-SGAHILRCHSKRRRVRQGRGSSPASAPGCGA 121
VCRA +G RCH+ R V R + P +A GCGA
Sbjct: 162 VCRAAVAGGEYRRCHALERLVDAIRVACPHAAHGCGA 198
>05_01_0139 + 929343-930188
Length = 281
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +3
Query: 168 VLAVACYDIGEYVRHYPRGKHI--IEQLGGKNVS 263
++ VA Y G+ RH PRGKHI + L G +V+
Sbjct: 95 MVTVAGYTAGQRARHVPRGKHIAAVSILAGTSVT 128
>06_03_0722 - 23869981-23870250
Length = 89
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Frame = -3
Query: 225 CRADSGAHILRCHSKRRRVRQGRGSSPASAP-GCGAVLGHVRSNEPRFRARTWP 67
C A H + RRR G S P+S P GCG VL R WP
Sbjct: 30 CAAIEELHRRKRRGPRRRSTTGTSSRPSSTPKGCGGVLRLPPPGRRARRRDQWP 83
>09_06_0120 - 20973635-20974879
Length = 414
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 147 PASAPGCGAVLGHVRSNEPRFRARTWPICVPATIPGGHSLLQ-*HID 10
P + P G + G V+ EPR + P+ VPA +P +Q H+D
Sbjct: 344 PITLPPDGILAG-VKGEEPRASVQQMPVVVPAMVPKAQEPIQVRHVD 389
>08_01_0987 +
9979651-9979746,9979818-9980058,9980947-9981090,
9981253-9981313,9981603-9982061,9982472-9982529,
9983579-9983839
Length = 439
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -1
Query: 236 DDVFAARIVAHIFSDVIASDGEYDRVAALLQQVHQGAEQFLATFVQ 99
DD+F AR VA D A + + R+A + + +GA +AT VQ
Sbjct: 364 DDLFTARFVAATNGDEDAEEMQRYRIARMATKEAEGAAGGVATMVQ 409
>02_05_0902 +
32620668-32621209,32621847-32622258,32622471-32622675,
32622712-32622806,32622945-32623557,32623652-32623820,
32624392-32624749,32625226-32625336,32626207-32626561,
32627262-32627484,32627837-32628058,32628628-32628781
Length = 1152
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/76 (26%), Positives = 32/76 (42%)
Frame = -1
Query: 299 NVHSDRRDSGGT*HVFTTKLFDDVFAARIVAHIFSDVIASDGEYDRVAALLQQVHQGAEQ 120
+VH+ GT H F+ + F + +F DV + + + Q+H E+
Sbjct: 718 SVHNKMVSLLGTMHEFSQRPGTAKFLKNAIL-LFLDVFPRNHILEEAVLVTPQIHTAQEK 776
Query: 119 FLATFVQTSRVFAPEL 72
+LAT SR A L
Sbjct: 777 YLATPATASRALAKNL 792
>05_01_0380 + 2978256-2979284
Length = 342
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -3
Query: 228 VCR-ADSGAHILRCHSKRRRVRQGRGSSPASAPGCGA 121
VCR A +G RC++ R V R + P +A GCGA
Sbjct: 111 VCRVAVAGGEYRRCYALERLVDAIRVACPHAAHGCGA 147
>02_05_0184 + 26543156-26544019
Length = 287
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 186 SKRRRVRQGRGSSPASAPGCGAVLG 112
SK +++++ R +SPA PGCG G
Sbjct: 32 SKHKQLKRKRSTSPAPPPGCGGGQG 56
>09_04_0097 -
14573499-14574110,14574977-14575017,14575424-14575616,
14575697-14575837,14575970-14576197,14576297-14576552,
14576866-14577069,14577157-14577245,14577346-14577416,
14577498-14577579,14577653-14577715,14578018-14578155
Length = 705
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +3
Query: 9 DQYATEVKSGRLEWSPVHKSAKFWRENAA 95
+ Y T +++ R++ +PVH SA ++ EN +
Sbjct: 183 EYYGTGIRATRIKTAPVHASASWYLENVS 211
>05_05_0053 -
21931601-21931729,21931815-21932087,21932985-21933029,
21935298-21935742,21935883-21935929
Length = 312
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -3
Query: 168 RQGRGSSPASAPGCGAVLGHVR 103
R+GRG AS PG GA LG R
Sbjct: 79 REGRGIGAASVPGSGASLGLAR 100
>03_04_0098 - 17275045-17275665
Length = 206
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 174 RVRQGRGSSPASAPGCGAVLGHVRSNEPRFRARTWP 67
R G SSPA LGH R+ P + +R WP
Sbjct: 49 RCSHGWTSSPACTLSRHRNLGHSRAGAPGYSSRRWP 84
>01_06_1815 -
40064351-40064887,40064987-40065634,40065834-40065890,
40065921-40065941,40066714-40066941
Length = 496
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 96 RLNE-RGQELLRTLVHLLEKSRDPVVLAVACYDIGEYVRHYPR 221
R+ E R E+LRTL+ L + V++ AC+ G Y+ Y R
Sbjct: 266 RMQETRDAEILRTLIDFLVSA---VIVMSACFGYGTYIYSYQR 305
>03_06_0340 +
33252677-33252864,33253086-33254442,33254565-33254667,
33256081-33256171,33257208-33257300,33258316-33258471,
33258583-33258655
Length = 686
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +3
Query: 186 YDIGEYVRHYPRGKHIIEQLGGKNVSCTS*VTTIRMY-VTKPCSPCRN 326
+ +G+Y RH + GKNV C + R Y +T P P R+
Sbjct: 158 HSLGQYKRHQTPCLFYTSESAGKNVGCIYSLAEQRTYKITLPDPPIRD 205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,649,909
Number of Sequences: 37544
Number of extensions: 428303
Number of successful extensions: 1286
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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