Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0510
(770 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58788| Best HMM Match : No HMM Matches (HMM E-Value=.) 111 6e-25
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_51664| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79) 29 5.5
SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09) 29 5.5
SB_42963| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_42812| Best HMM Match : RVT_1 (HMM E-Value=8.4e-19) 28 9.6
>SB_58788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 111 bits (267), Expect = 6e-25
Identities = 60/107 (56%), Positives = 69/107 (64%), Gaps = 23/107 (21%)
Frame = +3
Query: 3 SFDQYATEVKSGRLEWSPVHKSAKFWRENAARLNERGQELLRTLV--------------- 137
+FD+YA EV+SGRLEWSPVHKS KFWRENA RLNE ELL+ LV
Sbjct: 312 NFDEYAAEVRSGRLEWSPVHKSEKFWRENAHRLNENKYELLKYLVLHKLCSSKEFLTVLI 371
Query: 138 --------HLLEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGK 254
LLE S DP++LAVA +D GEYVRHYPRGK ++E LG K
Sbjct: 372 PKPSRVLNKLLESSEDPLILAVAAHDTGEYVRHYPRGKTVLESLGCK 418
Score = 64.1 bits (149), Expect = 1e-10
Identities = 27/37 (72%), Positives = 34/37 (91%)
Frame = +2
Query: 257 RVMYLLSHDDPNVRYEALLAVQKLMVHNWEYLGKQLE 367
+VM +++H+DP+VR EALLAVQKLMVHNWEYLGK L+
Sbjct: 420 KVMQMMTHNDPSVRKEALLAVQKLMVHNWEYLGKALK 456
>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4085
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 622 IQKYDRILHV*KLCFNYDLINIIYYVNHKTV 714
+ YDR+LH+ + C+N LI++ + + K V
Sbjct: 2101 LSNYDRVLHILQYCYNGKLIDVGFLLGRKYV 2131
>SB_51664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = -3
Query: 192 CHSKRRRVRQGRGSSPASAPGCGAVLGHVRS---NEPRFRARTWPICVPA 52
C S+R+R+ Q +SPA G GAV + S E A W +C+ A
Sbjct: 125 CSSRRKRMSQSSENSPAMLSGAGAVCTGLMSEVMQELICEALQWFLCLHA 174
>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3066
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 199 NMCATIRAANTSSNNLVVKTCHVPPESRRSECTLRSLARRAETYG 333
N C I ANT+ NN V TC ++R + ++S RA G
Sbjct: 1259 NCCPPIPVANTTPNNGVATTCCGTIDARSAAVAVKSPEFRAAVLG 1303
>SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 266 YLLSHDDPNVRYEALLAVQKLMVHNWEYLGKQLEKEQID 382
YLL+ P+V L KL++ N E+ G Q++ E +D
Sbjct: 1227 YLLNVTIPHVGKTTRLGFVKLVIKNMEHQGPQIDVEAVD 1265
>SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)
Length = 820
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +3
Query: 144 LEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKNVSCTS*VTTIR 290
L +SRDPV + + + + YPRG I E+L NV TS T+R
Sbjct: 513 LLESRDPVTPS-SHDQVDSFEEGYPRGLSIKERLKSLNVGQTSISPTLR 560
>SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)
Length = 959
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +3
Query: 144 LEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKNVSCTS*VTTIR 290
L +SRDPV + + + + YPRG I E+L NV TS T+R
Sbjct: 652 LLESRDPVTPS-SHDQVDSFEEGYPRGLSIKERLKSLNVGQTSISPTLR 699
>SB_42963| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +1
Query: 211 TIRAANTSSNNLVVKTCHVPPESRRSECTLR---SLARRAETYGSQLGISRQATGEGTNR 381
T+RA T S +L V T +PP SR +E R S+ R Y S TG N
Sbjct: 125 TVRAHATRSVSLPVATGSIPPISRIAELISRGRTSICSRGNGYWSAAVSRAMRTGLFPNM 184
Query: 382 QTG 390
+G
Sbjct: 185 HSG 187
>SB_42812| Best HMM Match : RVT_1 (HMM E-Value=8.4e-19)
Length = 769
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 150 SPASAPGCGAVLGHVRS-NEPRFRARTWPICV 58
+P + G + LG V + N R+R R WP C+
Sbjct: 243 APMNVSGLRSFLGSVHNGNTARYRRRRWPSCL 274
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,179,262
Number of Sequences: 59808
Number of extensions: 511156
Number of successful extensions: 1350
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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