Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0510
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50199-6|AAA91266.1|  470|Caenorhabditis elegans Vacuolar h atpa...   126   2e-29
U41109-12|AAB37043.1|  451|Caenorhabditis elegans Hypothetical p...   119   2e-27
AF003141-8|AAK21480.1|  141|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z70682-1|CAA94584.1|  363|Caenorhabditis elegans Hypothetical pr...    28   6.4  
U39645-5|AAU05591.1|  345|Caenorhabditis elegans Hypothetical pr...    28   8.5  
U39645-4|AAU05592.1|  341|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>U50199-6|AAA91266.1|  470|Caenorhabditis elegans Vacuolar h atpase
           protein 15 protein.
          Length = 470

 Score =  126 bits (303), Expect = 2e-29
 Identities = 52/84 (61%), Positives = 70/84 (83%)
 Frame = +3

Query: 3   SFDQYATEVKSGRLEWSPVHKSAKFWRENAARLNERGQELLRTLVHLLEKSRDPVVLAVA 182
           S+D+Y +EV+SGRL+WSPVHKS KFWRENA++ N++  E+++ L+ LLE S DP++L VA
Sbjct: 338 SYDEYYSEVRSGRLQWSPVHKSEKFWRENASKFNDKQFEVVKILIKLLESSHDPLILCVA 397

Query: 183 CYDIGEYVRHYPRGKHIIEQLGGK 254
            +DIGEYVRHYPRGK ++EQ  GK
Sbjct: 398 SHDIGEYVRHYPRGKTVVEQYQGK 421



 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 30/38 (78%), Positives = 34/38 (89%)
 Frame = +2

Query: 260 VMYLLSHDDPNVRYEALLAVQKLMVHNWEYLGKQLEKE 373
           VM LL+ +DPNVRY ALLAVQKLMVHNWEYLGKQL+ +
Sbjct: 424 VMRLLTAEDPNVRYHALLAVQKLMVHNWEYLGKQLDSD 461


>U41109-12|AAB37043.1|  451|Caenorhabditis elegans Hypothetical
           protein F52E1.10 protein.
          Length = 451

 Score =  119 bits (287), Expect = 2e-27
 Identities = 53/84 (63%), Positives = 64/84 (76%)
 Frame = +3

Query: 3   SFDQYATEVKSGRLEWSPVHKSAKFWRENAARLNERGQELLRTLVHLLEKSRDPVVLAVA 182
           SFD+Y  E++ G L WSP HK   FW ENA RLN+  QELL+ LV +LEKS DP+VL VA
Sbjct: 331 SFDEYENELRQGSLHWSPAHKCEVFWNENAHRLNDNRQELLKLLVAMLEKSNDPLVLCVA 390

Query: 183 CYDIGEYVRHYPRGKHIIEQLGGK 254
            +DIGE+VR+YPRGK  +EQLGGK
Sbjct: 391 AHDIGEFVRYYPRGKLKVEQLGGK 414



 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 21/35 (60%), Positives = 28/35 (80%)
 Frame = +2

Query: 260 VMYLLSHDDPNVRYEALLAVQKLMVHNWEYLGKQL 364
           +M LL+  DPNVRY ALLA QKLM++NW+ LG ++
Sbjct: 417 MMRLLTVKDPNVRYHALLAAQKLMINNWKDLGLEI 451


>AF003141-8|AAK21480.1|  141|Caenorhabditis elegans Hypothetical
           protein W02D3.1 protein.
          Length = 141

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +3

Query: 165 VVLAVACYDIGEYVRHYPRGKHIIEQLGGKNVS 263
           +V++   YD+ +++  +P G+ +I QL GK+ +
Sbjct: 26  IVISGKVYDVTKFLNEHPGGEEVITQLAGKDAT 58


>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical protein
            F36H2.3 protein.
          Length = 1388

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 241  CSMMCLPRG*WRTYSPMS*QATASTTGS 158
            CS + +P G   TYSP S   T+ T+G+
Sbjct: 1055 CSALTIPSGAQATYSPFSLSTTSFTSGT 1082


>Z70682-1|CAA94584.1|  363|Caenorhabditis elegans Hypothetical
           protein F08G5.2 protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = -3

Query: 276 LRRYMTRFYHQVVR*CVCRADSGAHILRCHSKRRRVRQGRGSSP---ASAPGCGAVLGHV 106
           LRR+  R YH+V    +C    G+ +     +     + RG  P    + P  GA L  +
Sbjct: 168 LRRHFDRIYHEVDLRWLCLYPEGSRLFLIQKRNSEFEKKRGLPPLTNCAYPRLGAALSAI 227

Query: 105 R 103
           +
Sbjct: 228 K 228


>U39645-5|AAU05591.1|  345|Caenorhabditis elegans Hypothetical
           protein C14F11.4a protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = +1

Query: 148 RRAATLSYSPSLAMTSENMCATIRAANTSSN---NLVVKTCHVPPESRRSECTLRSLARR 318
           R A+ +   P  A  +E M +  R+++ SSN   NLV+ T   PP    SE +  S   +
Sbjct: 226 RPASAIGSRPGSA--AEKMSSVSRSSSKSSNLKANLVMPTRRSPPPKTPSEASYASTRPK 283

Query: 319 AETYGSQLGIS 351
            E   S    S
Sbjct: 284 TERSSSHKSAS 294


>U39645-4|AAU05592.1|  341|Caenorhabditis elegans Hypothetical
           protein C14F11.4b protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = +1

Query: 148 RRAATLSYSPSLAMTSENMCATIRAANTSSN---NLVVKTCHVPPESRRSECTLRSLARR 318
           R A+ +   P  A  +E M +  R+++ SSN   NLV+ T   PP    SE +  S   +
Sbjct: 222 RPASAIGSRPGSA--AEKMSSVSRSSSKSSNLKANLVMPTRRSPPPKTPSEASYASTRPK 279

Query: 319 AETYGSQLGIS 351
            E   S    S
Sbjct: 280 TERSSSHKSAS 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,038,437
Number of Sequences: 27780
Number of extensions: 388035
Number of successful extensions: 1060
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)