Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0510
         (770 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g42050.1 68416.m04311 vacuolar ATP synthase subunit H family ...    86   2e-17
At3g15095.1 68416.m01909 expressed protein                             32   0.36 
At4g24530.1 68417.m03516 expressed protein contains Pfam PF03138...    32   0.48 
At2g15780.1 68415.m01809 glycine-rich protein similar to Blue co...    31   0.64 
At1g06630.1 68414.m00700 F-box family protein contains F-box dom...    29   3.4  
At2g17900.1 68415.m02073 zinc finger (MYND type) family protein ...    29   4.5  
At5g65470.1 68418.m08233 expressed protein contains Pfam PF03138...    28   5.9  
At3g66652.1 68416.m00776 fip1 motif-containing protein contains ...    28   5.9  
At2g37330.1 68415.m04578 expressed protein  and genefinder             28   7.9  

>At3g42050.1 68416.m04311 vacuolar ATP synthase subunit H family
           protein identical to probable vacuolar ATP synthase
           subunit H (EC 3.6.3.14)(V-ATPase H subunit) (Vacuolar
           proton pump H subunit) (Vacuolar proton pump subunit
           SFD) SP:Q9LX65 from [Arabidopsis thaliana]; contains
           Pfam PF03224: V-ATPase subunit H
          Length = 441

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 36/84 (42%), Positives = 54/84 (64%)
 Frame = +3

Query: 3   SFDQYATEVKSGRLEWSPVHKSAKFWRENAARLNERGQELLRTLVHLLEKSRDPVVLAVA 182
           SFD+Y  EV  G L+W+P+HK   FWREN     E   ++LR L+ +L+ S DP  LAVA
Sbjct: 321 SFDKYKQEVLLGHLDWNPMHKETNFWRENVTCFEENDFQILRVLLTILDTSSDPRSLAVA 380

Query: 183 CYDIGEYVRHYPRGKHIIEQLGGK 254
           C+DI ++++++  G+ I+  L  K
Sbjct: 381 CFDISQFIQYHAAGRVIVADLKAK 404


>At3g15095.1 68416.m01909 expressed protein
          Length = 684

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = +1

Query: 202 MCATIRAANTSSNNLVVKTCHVPPESRRSECTLRSLARRAETYGS 336
           +C T R +++SS  L  K+ H P    RS C   SL+RR  T GS
Sbjct: 29  ICFTSRFSSSSSMRLSSKSIHSP---ARSACLTTSLSRRLRTSGS 70


>At4g24530.1 68417.m03516 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'PsRT17-1 like protein'  based on similarity to PsRT17-1
           (GP:1778376) [Pisum sativum] which was based upon
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 519

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 12/27 (44%), Positives = 21/27 (77%)
 Frame = +3

Query: 9   DQYATEVKSGRLEWSPVHKSAKFWREN 89
           D YAT +++ R++ +PVH SA+++ EN
Sbjct: 184 DYYATGIRATRIKTAPVHASAEWYLEN 210


>At2g15780.1 68415.m01809 glycine-rich protein similar to Blue
           copper protein precursor (SP:Q41001) {Pisum sativum};
           contains a Pfam PF02298: Plastocyanin-like domain
           related to blue copper-binding protein; contains a
           domain related to blue copper-binding protein
          Length = 257

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 343 GISRQATGEGTNRQTGWHCGWS*GINF 423
           G S  ++G G+N ++GW  GW  G N+
Sbjct: 36  GHSNNSSGSGSNSRSGWGWGWGQGSNY 62


>At1g06630.1 68414.m00700 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 403

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -3

Query: 447 LIYNVMS*KIYALAPTTVPACLSICSFSSCLPRYSQL*TISFCT 316
           LI  + + +I +L+P +V    S C +   LP ++ L ++SF T
Sbjct: 284 LIMGIRNVEILSLSPDSVGVIYSCCKYGLLLPVFNNLVSLSFGT 327


>At2g17900.1 68415.m02073 zinc finger (MYND type) family protein /
           SET domain-containing protein contains Pfam profiles
           PF00856: SET domain,  PF01753: MYND zinc finger (ZnF)
           domain; confirmed by cDNA (Paola Vittorioso--accession
           not assigned yet (paola.vittorioso@uniroma1.it)
          Length = 480

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +3

Query: 303 KPCSPCRNLWFTTGNISASNWRRNKSTNRLALWLELRHKFFMT 431
           K CS C+ +W+   +   S W+ ++   +    LE   + F+T
Sbjct: 66  KKCSACQVVWYCGSSCQKSEWKLHRDECKALTRLEKEKRKFVT 108


>At5g65470.1 68418.m08233 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;
          Length = 504

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 9   DQYATEVKSGRLEWSPVHKSAKFWRENAA 95
           + Y T V+  R++ +PVH SA ++ EN +
Sbjct: 168 EYYGTAVRETRVKTAPVHASANWYIENVS 196


>At3g66652.1 68416.m00776 fip1 motif-containing protein contains
           Pfam profile PF05182: Fip1 motif
          Length = 980

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +2

Query: 26  SKEWPPGMVAGTQIGQVLARKRGSFERTWPRTA 124
           SK  P   V  T  G   A K  SF+R W R A
Sbjct: 97  SKALPASCVFNTNFGGYEASKASSFQRRWTRNA 129


>At2g37330.1 68415.m04578 expressed protein  and genefinder
          Length = 273

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 168 VLAVACYDIGEYVRHYPRGKHI 233
           +++VA Y  G+  RH PRGK++
Sbjct: 87  MVSVAGYTAGQRARHVPRGKYV 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,631,347
Number of Sequences: 28952
Number of extensions: 338766
Number of successful extensions: 861
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)