Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0509
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   118   7e-28
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    31   0.24 
SPAC1527.02 |sft2||Golgi transport protein Sft2 |Schizosaccharom...    29   0.75 
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   3.0  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    26   5.3  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    26   5.3  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    26   7.0  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.2  
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    25   9.2  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  118 bits (285), Expect = 7e-28
 Identities = 54/85 (63%), Positives = 68/85 (80%)
 Frame = +1

Query: 256 LDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNT 435
           +++ P LE+LLP ++GNVGFVFT  DL EVR+ ++ N + APARP AIAPL V +PA NT
Sbjct: 67  INDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNT 126

Query: 436 GLGPEKTSFFQALSIPTKISKGTIE 510
           G+ P KTSFFQAL IPTKI++GTIE
Sbjct: 127 GMEPGKTSFFQALGIPTKITRGTIE 151



 Score = 96.3 bits (229), Expect = 4e-21
 Identities = 46/93 (49%), Positives = 61/93 (65%)
 Frame = +3

Query: 480 PYQDFKGYY*IINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI 659
           P +  +G   I +DVH++    KVG SEATLLNMLNISPF+YG+ V  +YD G +F+PEI
Sbjct: 142 PTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEI 201

Query: 660 LDIKPEDLRAKFQAGVANVAALSLAIGYPTIAS 758
           LD+  EDL     +  + + A+SL   YPTI S
Sbjct: 202 LDVSEEDLIGHLLSAASIITAISLGANYPTILS 234



 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 27/57 (47%), Positives = 41/57 (71%)
 Frame = +2

Query: 80  KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIK 250
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG++ ++MGKNTM+R+A++
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMR 64


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 235 AQSHQRPLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAP-ARPGAIAPLS 411
           A  H    ++   + KL   + G VG +FT     EV     E+ VQ   AR GA+AP +
Sbjct: 76  ALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFT 134

Query: 412 VVIPA 426
            VIPA
Sbjct: 135 HVIPA 139


>SPAC1527.02 |sft2||Golgi transport protein Sft2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = -1

Query: 405 WGNGTRTS--WSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQFLEGWIVVQGSLMALRI 232
           W N  RTS  WS D+   +  T+ +  ++    +  +L  W++++   I + GSL    I
Sbjct: 27  WYNRLRTSMPWSNDYT--EIPTNASGGNSYFQSSEFSLSRWERYMLFGICLLGSLACYAI 84

Query: 231 IVFFPMSTILEPR 193
             F     +L+PR
Sbjct: 85  ACFMFPVLVLKPR 97


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 353 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 255
           L +T  +S    + PTLP +   + S +G+LSR
Sbjct: 35  LKQTVLQSSSFKSFPTLPRLAARNISNSGILSR 67


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = -2

Query: 449 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 279
           +G  PV    +  + G++ P  AGAW L  N L    T   +   +NT P  PL  G  F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194

Query: 278 SRAGL 264
           S   L
Sbjct: 195 SEEEL 199


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 509 SIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 390
           S  P + L+GI  AW  E  S  R  +    T+    +AP
Sbjct: 291 SFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 220 KKHNDAQSHQRPLDNNPALEKLLPHIKGNV 309
           KK NDA++  + L+NNP L    P ++ N+
Sbjct: 288 KKLNDAENRIKELENNPTL-SFNPELEKNL 316


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/63 (22%), Positives = 28/63 (44%)
 Frame = +2

Query: 254 PWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFPPTT 433
           P T+   +   C TS + L + +P  ++  + TNC  T + +     P+     +   +T
Sbjct: 521 PVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNC-TTSTSVPYTSTPVTSSNYTISSST 579

Query: 434 PAS 442
           P +
Sbjct: 580 PVT 582


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 388 PGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTK-ISKGTIESSTMYTS*SPVTRLEL 558
           P AI   + V  + N     E T   +ALS   K +  G ++S  +YT   PVT  ++
Sbjct: 470 PAAIQEETSVSKSFNIIAKCEDTGSMEALSDYLKPLQFGKVKSRVLYTGVGPVTETDI 527


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,482,383
Number of Sequences: 5004
Number of extensions: 74070
Number of successful extensions: 208
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)