Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0509
(780 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 127 8e-30
U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical pr... 34 0.13
U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily ass... 30 2.1
U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily ass... 30 2.1
U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily ass... 30 2.1
Z70686-2|CAA94610.1| 570|Caenorhabditis elegans Hypothetical pr... 29 4.9
U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore co... 29 4.9
U20142-2|AAB60235.1| 570|Caenorhabditis elegans SPE-26 protein ... 29 4.9
Z68752-7|CAA92982.2| 693|Caenorhabditis elegans Hypothetical pr... 28 6.5
U53154-2|AAC25856.1| 358|Caenorhabditis elegans Hypothetical pr... 28 6.5
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ... 28 6.5
AC024849-3|AAK68547.1| 327|Caenorhabditis elegans Hypothetical ... 28 8.6
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 127 bits (307), Expect = 8e-30
Identities = 60/85 (70%), Positives = 69/85 (81%)
Frame = +1
Query: 256 LDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNT 435
L NP+LEKLLPHI NVGFVFT+ DL E+R KLLEN+ APA+ GAIAP V +P NT
Sbjct: 69 LGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNT 128
Query: 436 GLGPEKTSFFQALSIPTKISKGTIE 510
G+GPEKTSFFQAL IPTKI++GTIE
Sbjct: 129 GMGPEKTSFFQALQIPTKIARGTIE 153
Score = 126 bits (305), Expect = 1e-29
Identities = 56/93 (60%), Positives = 76/93 (81%)
Frame = +3
Query: 480 PYQDFKGYY*IINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI 659
P + +G I+NDVH++K GDKVGASE+ LLNML ++PFSYGLVV+QVYD GT++ PE+
Sbjct: 144 PTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSYGLVVRQVYDDGTLYTPEV 203
Query: 660 LDIKPEDLRAKFQAGVANVAALSLAIGYPTIAS 758
LD+ E+LR +F +GV NVA++SLA+ YPT+AS
Sbjct: 204 LDMTTEELRKRFLSGVRNVASVSLAVNYPTLAS 236
Score = 102 bits (244), Expect = 3e-22
Identities = 41/66 (62%), Positives = 58/66 (87%)
Frame = +2
Query: 53 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 232
M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RG + +LMGKNTM
Sbjct: 1 MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60
Query: 233 MRKAIK 250
+RKA++
Sbjct: 61 IRKALR 66
>U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical
protein F10E7.5 protein.
Length = 220
Score = 33.9 bits (74), Expect = 0.13
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +1
Query: 274 LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIP-AHNTGLGPE 450
L K +KG G +FT EV + E + AR G +A +VV+P +
Sbjct: 90 LHKASAILKGQCGLMFTNMSKKEVEAEFSEASEEDYARVGDVATETVVLPEGPISQFAFS 149
Query: 451 KTSFFQALSIPTKISKGTI 507
+ L +PTK+ KG I
Sbjct: 150 MEPQLRKLGLPTKLDKGVI 168
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/74 (25%), Positives = 37/74 (50%)
Frame = +2
Query: 26 RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS 205
R +L+++ ++ K T K+N ++ +D+Y FI N+ S + IR + +S
Sbjct: 6 RDKNVSLTKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENS 64
Query: 206 IVLMGKNTMMRKAI 247
GKN ++ A+
Sbjct: 65 RFFFGKNNVISIAL 78
>U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform b protein.
Length = 868
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +3
Query: 633 SGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASARIPLP 776
+G + IL I E++ K+Q+GV + + +G + R P+P
Sbjct: 408 AGLLVGDTILSINGEEMSDKYQSGVTRILHEAARVGEADVLILRAPVP 455
>U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform a protein.
Length = 1004
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +3
Query: 633 SGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASARIPLP 776
+G + IL I E++ K+Q+GV + + +G + R P+P
Sbjct: 363 AGLLVGDTILSINGEEMSDKYQSGVTRILHEAARVGEADVLILRAPVP 410
>U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform c protein.
Length = 1099
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +3
Query: 633 SGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASARIPLP 776
+G + IL I E++ K+Q+GV + + +G + R P+P
Sbjct: 458 AGLLVGDTILSINGEEMSDKYQSGVTRILHEAARVGEADVLILRAPVP 505
>Z70686-2|CAA94610.1| 570|Caenorhabditis elegans Hypothetical
protein R10H10.2 protein.
Length = 570
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -2
Query: 776 WQWNAG*SNSWVTNSQRKSSYISNSSLELGTEIFWFDVQNFR 651
WQW+ N +YISNSS+ I+ F QNFR
Sbjct: 316 WQWDR------CNNMMEPRNYISNSSVVYDGRIYVFGGQNFR 351
>U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore complex
protein protein12 protein.
Length = 1847
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -2
Query: 302 PLMCGNSFSRAGLLSRGL*WLCASLCFFP*ARYWSHVARYGSAASVAS 159
P C +F+R + + WL S F P Y + R+ S+ S +S
Sbjct: 1530 PFECQVAFTRRSKIISAVNWLTVSAVFSPVFGYGCEIRRFDSSVSTSS 1577
>U20142-2|AAB60235.1| 570|Caenorhabditis elegans SPE-26 protein
protein.
Length = 570
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -2
Query: 776 WQWNAG*SNSWVTNSQRKSSYISNSSLELGTEIFWFDVQNFR 651
WQW+ N +YISNSS+ I+ F QNFR
Sbjct: 316 WQWDR------CNNMMEPRNYISNSSVVYDGRIYVFGGQNFR 351
>Z68752-7|CAA92982.2| 693|Caenorhabditis elegans Hypothetical
protein T12G3.1 protein.
Length = 693
Score = 28.3 bits (60), Expect = 6.5
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 245 IKDPWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQ-LVLVPLPHCQSSF 421
I DP TT P+ T A+ S +PA T+ S+ T ++ L++ PLP +S+
Sbjct: 514 IADPPTT--PNTEPATTELASTTSATPAVTAPASIVPVTPTAPIVETLIVPPLPPVESNP 571
Query: 422 PPTTP 436
TP
Sbjct: 572 EEVTP 576
>U53154-2|AAC25856.1| 358|Caenorhabditis elegans Hypothetical
protein C33G8.12 protein.
Length = 358
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 8 LVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDE 121
L+ K S ++ +SR+ +EDK + SN+++K QLL E
Sbjct: 156 LLWKLGESIFSDVSRLSKEDKNSMISNFYIK-WQLLME 192
>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
protein Y46B2A.3 protein.
Length = 1145
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 416 TTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPT 306
TT P AG WT+ +N ++R TR P +PT
Sbjct: 192 TTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227
>AC024849-3|AAK68547.1| 327|Caenorhabditis elegans Hypothetical
protein Y67D8B.2 protein.
Length = 327
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 355 LLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 504
+L +Q A A+ L+ +P TGL P + FQAL P I+ T
Sbjct: 42 VLNRYMQLEAYCDAVDDLTGALP--KTGLAPNEPDLFQALFFPRSIAPRT 89
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,258,657
Number of Sequences: 27780
Number of extensions: 422237
Number of successful extensions: 1195
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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