Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0509
         (780 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)      108   4e-24
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)...   105   4e-23
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)...   105   4e-23
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put...    29   2.6  
At5g55870.1 68418.m06964 hypothetical protein contains Pfam prof...    28   6.0  
At5g13260.1 68418.m01523 expressed protein                             28   6.0  
At5g01730.1 68418.m00091 expressed protein                             28   8.0  
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa...    28   8.0  
At3g56700.1 68416.m06307 male sterility protein, putative simila...    28   8.0  
At3g50610.1 68416.m05534 hypothetical protein                          28   8.0  
At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB protein...    28   8.0  

>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 
          Length = 317

 Score =  108 bits (260), Expect = 4e-24
 Identities = 52/89 (58%), Positives = 67/89 (75%)
 Frame = +3

Query: 495 KGYY*IINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKP 674
           KG   II  V ++K GDKVG+SEA LL  L I PFSYGLVV+ VYD+G++F PE+L++  
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVLNLTE 211

Query: 675 EDLRAKFQAGVANVAALSLAIGYPTIASA 761
           +DL  KF AGV+ + ALSLAI YPT+A+A
Sbjct: 212 DDLVEKFAAGVSMITALSLAISYPTVAAA 240



 Score =  103 bits (246), Expect = 2e-22
 Identities = 48/85 (56%), Positives = 63/85 (74%)
 Frame = +1

Query: 265 NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLG 444
           N A   LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+   NTGL 
Sbjct: 75  NQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLD 134

Query: 445 PEKTSFFQALSIPTKISKGTIESST 519
           P +TSFFQ L+IPTKI+KGT+E  T
Sbjct: 135 PSQTSFFQVLNIPTKINKGTVEIIT 159



 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +2

Query: 68  KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAI 247
           KA  K  Y  K+ QLL+EY +  +V ADNVGS Q+Q IR  LRG S+VLMGKNTMM++++
Sbjct: 7   KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSV 66

Query: 248 K 250
           +
Sbjct: 67  R 67


>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
           similar to 60S acidic ribosomal protein P0 GI:2088654
           [Arabidopsis thaliana]
          Length = 323

 Score =  105 bits (251), Expect = 4e-23
 Identities = 48/89 (53%), Positives = 67/89 (75%)
 Frame = +3

Query: 495 KGYY*IINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKP 674
           KG   II  V ++K GDKVG+SEA LL  L I PFSYGLVV+ VYD+G++F+PE+LD+  
Sbjct: 151 KGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTE 210

Query: 675 EDLRAKFQAGVANVAALSLAIGYPTIASA 761
           + L  KF +G++ V +L+LA+ YPT+A+A
Sbjct: 211 DQLVEKFASGISMVTSLALAVSYPTLAAA 239



 Score =  103 bits (248), Expect = 1e-22
 Identities = 48/85 (56%), Positives = 64/85 (75%)
 Frame = +1

Query: 265 NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLG 444
           N A+  LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+   NTGL 
Sbjct: 74  NTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLD 133

Query: 445 PEKTSFFQALSIPTKISKGTIESST 519
           P +TSFFQ L+IPTKI+KGT+E  T
Sbjct: 134 PSQTSFFQVLNIPTKINKGTVEIIT 158



 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 35/66 (53%), Positives = 47/66 (71%)
 Frame = +2

Query: 53  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 232
           M +  KA  K  Y  K+ QL+DEY +  +V ADNVGS Q+Q IR  LRG S+VLMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 233 MRKAIK 250
           M+++++
Sbjct: 61  MKRSVR 66


>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
           similar to putative 60S acidic ribosomal protein P0
           GB:P50346 [Glycine max]
          Length = 320

 Score =  105 bits (251), Expect = 4e-23
 Identities = 48/89 (53%), Positives = 67/89 (75%)
 Frame = +3

Query: 495 KGYY*IINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKP 674
           KG   II  V ++K GDKVG+SEA LL  L I PFSYGLVV+ VYD+G++F+PE+LD+  
Sbjct: 151 KGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTE 210

Query: 675 EDLRAKFQAGVANVAALSLAIGYPTIASA 761
           + L  KF +G++ V +L+LA+ YPT+A+A
Sbjct: 211 DQLVEKFASGISMVTSLALAVSYPTLAAA 239



 Score =  103 bits (248), Expect = 1e-22
 Identities = 48/85 (56%), Positives = 64/85 (75%)
 Frame = +1

Query: 265 NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLG 444
           N A+  LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+   NTGL 
Sbjct: 74  NTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLD 133

Query: 445 PEKTSFFQALSIPTKISKGTIESST 519
           P +TSFFQ L+IPTKI+KGT+E  T
Sbjct: 134 PSQTSFFQVLNIPTKINKGTVEIIT 158



 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 35/66 (53%), Positives = 47/66 (71%)
 Frame = +2

Query: 53  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 232
           M +  KA  K  Y  K+ QL+DEY +  +V ADNVGS Q+Q IR  LRG S+VLMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 233 MRKAIK 250
           M+++++
Sbjct: 61  MKRSVR 66


>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 890

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 262 NNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLL 360
           N P ++K    PHI   VGF+ T+GD+  + D  L
Sbjct: 781 NQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKL 815


>At5g55870.1 68418.m06964 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 224

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 25/101 (24%), Positives = 38/101 (37%)
 Frame = +2

Query: 113 LDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDPWTTIQPSRNCCH 292
           L + P C IVG    G+  + ++ + +  S    + K   +     DP  TI  S     
Sbjct: 25  LMQTPPCSIVGVQPCGADHLGRLDVMMM-SRRTCLEKKVPLELVNSDPMVTIGSSHGWVA 83

Query: 293 TSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQS 415
           T +         +  L  V +    K      LV LPHCQ+
Sbjct: 84  TLKED--GILRLQDDLNPVASDTNPKRIPLPPLVTLPHCQT 122


>At5g13260.1 68418.m01523 expressed protein
          Length = 537

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 212 ARYWSHVARYGSAASVASPRYRH 144
           ARYW   +RYG  + +A+ +Y +
Sbjct: 330 ARYWGLASRYGICSDIATSKYEY 352


>At5g01730.1 68418.m00091 expressed protein
          Length = 1192

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +1

Query: 433 TGLGPEKTSFFQALSIPTKISKGTIESSTMYTS*SPVTRLELLKPPFSTC*TSLHSHM 606
           TG    +TS  +  S PT+     ++SS +    S +T +E L  P+    TSL+ H+
Sbjct: 822 TGSANSRTSSDE--SPPTQNGSVGVQSSPLDVFPSSITEIEALHAPYQEIFTSLNDHI 877


>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 666

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = -2

Query: 413 TDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 300
           T+NGA   G A      S SLS  S  SP VN +  LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242


>At3g56700.1 68416.m06307 male sterility protein, putative similar
           to SP|Q08891 Male sterility protein 2 {Arabidopsis
           thaliana}; contains Pfam profile PF03015: Male sterility
           protein
          Length = 527

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 272 PSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSK 376
           P R   HT+R    SC   ETS  +VT+    K++
Sbjct: 33  PRRRLSHTTRRVQTSCFYGETSFEAVTSLVTPKTE 67


>At3g50610.1 68416.m05534 hypothetical protein
          Length = 229

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +1

Query: 292 HIKGNVGFVFTRGDLVEVRD-KLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEK 453
           H KGNV     + D       KLL+  VQ   + G+    +   P H+ G+G +K
Sbjct: 45  HKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHFKTGSTDDFAPTSPGHSPGVGHKK 99


>At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB
           protein-related similar to ATP-dependent Clp protease,
           ATP-binding subunit ClpB (GI:24982014) [Pseudomonas
           putida KT2440]; similar to  ClpB protein
           (SP:Q9RA63){Thermus thermophilus}
          Length = 422

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = -1

Query: 429 VGGNDD*QWGNGTRTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQ 283
           +G + +  +G+ T      + +LQ      + +S+GE E    +D W Q
Sbjct: 329 IGSHFERCFGSETHLELDKEVILQILAASWSSLSSGEEEGRTIVDQWMQ 377


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,580,917
Number of Sequences: 28952
Number of extensions: 408496
Number of successful extensions: 1164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)