Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0508
(549 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) 129 2e-30
SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) 122 2e-28
SB_3221| Best HMM Match : rve (HMM E-Value=3) 29 1.9
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042) 29 3.3
SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13) 28 4.4
SB_37206| Best HMM Match : MFS_1 (HMM E-Value=3.4e-17) 28 5.8
SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20) 27 7.6
>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
Length = 143
Score = 129 bits (311), Expect = 2e-30
Identities = 58/65 (89%), Positives = 64/65 (98%)
Frame = +2
Query: 257 KKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 436
KK+TAFVP DGCLN+IEENDEVL++GFGR+GHAVGDIPGVRFKVVKVANVSLLAL+KEKK
Sbjct: 79 KKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIPGVRFKVVKVANVSLLALFKEKK 138
Query: 437 ERPRS 451
ERPRS
Sbjct: 139 ERPRS 143
Score = 50.8 bits (116), Expect = 7e-07
Identities = 23/28 (82%), Positives = 26/28 (92%)
Frame = +3
Query: 180 EKVGVEAKQPNSAIRKCVRVQLIKNERK 263
++ GVEAKQPNSAIRKCVRVQLIKN +K
Sbjct: 53 QEPGVEAKQPNSAIRKCVRVQLIKNGKK 80
>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
Length = 413
Score = 122 bits (294), Expect = 2e-28
Identities = 55/66 (83%), Positives = 61/66 (92%)
Frame = +3
Query: 66 NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 245
+HRR+Q+W DK +KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 14 SHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 73
Query: 246 IKNERK 263
IKN +K
Sbjct: 74 IKNGKK 79
Score = 82.2 bits (194), Expect = 3e-16
Identities = 33/40 (82%), Positives = 39/40 (97%)
Frame = +2
Query: 257 KKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGV 376
KK+TAFVP DGCLN+IEENDEVL++GFGR+GHAVGDIPG+
Sbjct: 78 KKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIPGI 117
>SB_3221| Best HMM Match : rve (HMM E-Value=3)
Length = 324
Score = 29.5 bits (63), Expect = 1.9
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = -1
Query: 474 SLITMYTYDLGRSFFSL*RARRDTLATFTTLKRTPGMSPTA*PLRPNPATSTSSFSSMWF 295
S T TYDL SF+S+ + + LAT +K++P + + L+P A S S
Sbjct: 9 SFDTFPTYDLA-SFYSVLCSGDEQLATIKLMKKSPSLFQKSHTLKPR-ANCASIASETLA 66
Query: 294 RQPSRGTNAV 265
+Q R N V
Sbjct: 67 QQCWRSLNTV 76
>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 110 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AA 208
S HG MEG P W +S G P+ S C S +A
Sbjct: 85 SQHGTRMEGVPVCWYVSVWGLSPQVSQCDSVSA 117
>SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)
Length = 623
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +3
Query: 417 LSTKRKRSDQDHRCTL**VTCCREARCL*VQKCKILVHNKYCVQ 548
+S+KR RS+ + C V CC E V KC V K CV+
Sbjct: 1 MSSKRTRSESSNLC----VVCCEEIEFSAVGKCDHPVCYKCCVR 40
>SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 694
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +3
Query: 417 LSTKRKRSDQDHRCTL**VTCCREARCL*VQKCKILVHNKYCVQ 548
+S+KR RS+ + C V CC E V KC V K CV+
Sbjct: 1 MSSKRTRSESSNLC----VVCCEEIEFSAVGKCDHPVCYKCCVR 40
>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
Length = 943
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = -3
Query: 178 RTMPFA*D-APPKGLAFHFVPMW-AFLN-SLSAHR 83
R +PF+ APPKG F VP+W +F N S+ HR
Sbjct: 902 RKVPFSSVLAPPKGYRFLIVPLWRSFSNRSVFGHR 936
>SB_37206| Best HMM Match : MFS_1 (HMM E-Value=3.4e-17)
Length = 1088
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 271 CGHFLSFLMSCTRTHLRMAELGCLASTPTFS 179
CG FL+F M+ + ELGC+ S P S
Sbjct: 608 CGAFLTFGMAAAVIGPTLLELGCVTSRPVNS 638
>SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)
Length = 255
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 70 TVVNSDGRTKNSRKPTWVRNGRLTLSVVHLT 162
T V R N++KP +R+GR+T+S+ +T
Sbjct: 103 THVQFHHRDTNTKKPVHLRDGRVTVSLAAMT 133
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,553,419
Number of Sequences: 59808
Number of extensions: 418120
Number of successful extensions: 862
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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