Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0508
(549 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70684-7|CAA94601.1| 143|Caenorhabditis elegans Hypothetical pr... 127 5e-30
Z92838-1|CAB07406.1| 157|Caenorhabditis elegans Hypothetical pr... 36 0.025
AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 28 5.1
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 28 5.1
Z81128-8|CAB03402.1| 811|Caenorhabditis elegans Hypothetical pr... 27 6.7
U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p... 27 8.9
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 27 8.9
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 27 8.9
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 27 8.9
>Z70684-7|CAA94601.1| 143|Caenorhabditis elegans Hypothetical
protein F28D1.7 protein.
Length = 143
Score = 127 bits (307), Expect = 5e-30
Identities = 55/65 (84%), Positives = 62/65 (95%)
Frame = +3
Query: 69 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 248
HR+EQRW DK +KKAH+GT+WK+NPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVRVQLI
Sbjct: 16 HRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLI 75
Query: 249 KNERK 263
KN +K
Sbjct: 76 KNGKK 80
Score = 121 bits (292), Expect = 3e-28
Identities = 54/65 (83%), Positives = 60/65 (92%)
Frame = +2
Query: 257 KKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 436
KK+TAFVP DGCLN +EENDEVLV+GFGR GHAVGDIPGVRFK+VKVAN SL+AL+K KK
Sbjct: 79 KKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKK 138
Query: 437 ERPRS 451
ERPRS
Sbjct: 139 ERPRS 143
>Z92838-1|CAB07406.1| 157|Caenorhabditis elegans Hypothetical
protein T03D8.2 protein.
Length = 157
Score = 35.5 bits (78), Expect = 0.025
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +3
Query: 150 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 245
G SH KGIVL+ V K+PNS RKC V+L
Sbjct: 72 GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL 103
>AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical
protein Y59A8B.9 protein.
Length = 187
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 387 TLKRTPGMSPTA*PLRPNPATSTSS 313
T RTP +P A P RP P+ S+++
Sbjct: 38 TTMRTPAATPAAPPTRPTPSRSSAA 62
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 387 TLKRTPGMSPTA*PLRPNPATSTSS 313
T RTP +P A P RP P+ S+++
Sbjct: 167 TTMRTPAATPAAPPTRPTPSRSSAA 191
>Z81128-8|CAB03402.1| 811|Caenorhabditis elegans Hypothetical
protein T23D8.9a protein.
Length = 811
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 266 TAFVPRDGCLNHIEEN 313
T FVP+DG LN I+EN
Sbjct: 653 TPFVPKDGVLNVIDEN 668
>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
protein 2, isoform a protein.
Length = 1538
Score = 27.1 bits (57), Expect = 8.9
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Frame = -3
Query: 208 GCLASTPTFSRTMPFA*DAPPKGLAFHF-VPMWAFLNSL---SAHRCSRRWFTS---YAP 50
GC S F + + K F++ V FLN+ S H +WFT YA
Sbjct: 366 GCCHSVGKFIKQLRIQIRIMVKTQIFYWSVITLVFLNTCCVASEHYGQPQWFTDFLKYAE 425
Query: 49 FVFLGVY 29
FVFLG++
Sbjct: 426 FVFLGIF 432
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 27.1 bits (57), Expect = 8.9
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Frame = -3
Query: 208 GCLASTPTFSRTMPFA*DAPPKGLAFHF-VPMWAFLNSL---SAHRCSRRWFTS---YAP 50
GC S F + + K F++ V FLN+ S H +WFT YA
Sbjct: 366 GCCHSVGKFIKQLRIQIRIMVKTQIFYWSVITLVFLNTCCVASEHYGQPQWFTDFLKYAE 425
Query: 49 FVFLGVY 29
FVFLG++
Sbjct: 426 FVFLGIF 432
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 27.1 bits (57), Expect = 8.9
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Frame = -3
Query: 208 GCLASTPTFSRTMPFA*DAPPKGLAFHF-VPMWAFLNSL---SAHRCSRRWFTS---YAP 50
GC S F + + K F++ V FLN+ S H +WFT YA
Sbjct: 500 GCCHSVGKFIKQLRIQIRIMVKTQIFYWSVITLVFLNTCCVASEHYGQPQWFTDFLKYAE 559
Query: 49 FVFLGVY 29
FVFLG++
Sbjct: 560 FVFLGIF 566
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 27.1 bits (57), Expect = 8.9
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Frame = -3
Query: 208 GCLASTPTFSRTMPFA*DAPPKGLAFHF-VPMWAFLNSL---SAHRCSRRWFTS---YAP 50
GC S F + + K F++ V FLN+ S H +WFT YA
Sbjct: 500 GCCHSVGKFIKQLRIQIRIMVKTQIFYWSVITLVFLNTCCVASEHYGQPQWFTDFLKYAE 559
Query: 49 FVFLGVY 29
FVFLG++
Sbjct: 560 FVFLGIF 566
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,368,033
Number of Sequences: 27780
Number of extensions: 288844
Number of successful extensions: 675
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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