Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0507
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    29   0.52 
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    27   2.8  

>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = +2

Query: 251 IIFSGISTLN*STVKFTHCRLVTFAFQASIY*LKKVYISSDSEYLSARYIMSICGARIDN 430
           I++  I  +N   V +  C L+T    AS   L   + ++++   S R + +  G  + N
Sbjct: 368 IVYGSIDIMNHIGVSYFACFLMTAGAAASSV-LTSTWYNNNTPNESRRAVFTSVGVPLAN 426

Query: 431 VLTMGSTNIF 460
           V+ + S NIF
Sbjct: 427 VMGLVSANIF 436


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 734 SRHYVTDNNRDVALTPNDHLIRSITILKNKRKGKSNSIT 618
           +R   TD N +   T N  + ++ T+  N +  KS+S+T
Sbjct: 364 TRFLKTDTNNEQKPTNNSTITKATTLSDNSQNDKSSSVT 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,662
Number of Sequences: 5004
Number of extensions: 49066
Number of successful extensions: 119
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)