Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0507
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8160| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.3  
SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5)           28   9.0  
SB_3824| Best HMM Match : Trypsin (HMM E-Value=2.8026e-45)             28   9.0  

>SB_8160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 516

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 506 SDSRRGNESAR*SNVDNYFCYCNVPKITIYLIH 604
           SDSR+G ES    +  NY C   V   TI+LI+
Sbjct: 4   SDSRQGKESDELQSPPNYLCVTAVKPATIHLIN 36


>SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5)
          Length = 585

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 455 CLSTPSLGHYQSWLH 411
           CL+ P+LG Y +WLH
Sbjct: 91  CLANPALGWYVTWLH 105


>SB_3824| Best HMM Match : Trypsin (HMM E-Value=2.8026e-45)
          Length = 234

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -3

Query: 572 YNNKNNYLHWINGRSHFLFSSLTKCLHTLTK-YKAVLARKCLSTPS 438
           Y   +NYL WI  R+       T C   ++  Y   + R C+ T S
Sbjct: 164 YTKVSNYLDWITKRAGSCVDKATNCKTAVSMCYSPTVKRYCVKTCS 209


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,872,529
Number of Sequences: 59808
Number of extensions: 329659
Number of successful extensions: 534
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)