Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0507
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.1  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 572 YNNKNNYLHWINGRSHFL 519
           YN K++YLH I   + F+
Sbjct: 93  YNGKHSYLHTITSPNKFV 110


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 733 RDITLRIIIEMSLLHLTI 680
           R  T RI+I  SL H TI
Sbjct: 251 RSSTSRIVISESLKHFTI 268


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 659 ILKNKRKGKSNSITP 615
           I++ KRK K+ ++TP
Sbjct: 463 IIEEKRKNKNKNLTP 477


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,973
Number of Sequences: 438
Number of extensions: 3487
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)