Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0506
(558 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 36 0.004
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 30 0.27
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.46
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 29 0.46
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar... 29 0.61
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 28 1.1
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 27 1.4
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 27 1.4
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 27 2.5
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch... 27 2.5
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 26 3.3
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 4.3
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 26 4.3
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 25 5.7
SPAC57A10.09c |||High-mobility group non-histone chromatin prote... 25 5.7
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 25 5.7
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 25 5.7
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 25 7.5
SPAC1B3.01c |||uracil phosphoribosyltransferase |Schizosaccharom... 25 10.0
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 35.9 bits (79), Expect = 0.004
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Frame = +2
Query: 89 KIVELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKEAEARAEFAELPCRN 268
K+++L+EE + N L E ++ ++ K +++ + L + A E + P +N
Sbjct: 307 KLLKLKEEKAKIKNQLFKSEEEKDPVGKQ----KLPLESSLSPLDHSSAEKEMQKAPAKN 362
Query: 269 CKRRSIGLKTNLSPKRRNT----RTSETIW-IPPS*SSFSRNKLPLYKDPKSECPGNTIS 433
+RR+ L+T L PK T R+ +W + S +R K L P+S +T
Sbjct: 363 KRRRTGSLETGLYPKESPTPSKKRSKRVLWSLKHIVSPGNREKHSLNSTPESIMKKDTKW 422
Query: 434 PR 439
P+
Sbjct: 423 PQ 424
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.9 bits (64), Expect = 0.27
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 101 LEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKEAEARA 241
LE+E + + LKSLE ++ + EE ++ LT +LK E+++
Sbjct: 897 LEQESAQLNSGLKSLEAEKQLLHTENEELHIRLDKLTGKLKIEESKS 943
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 29.1 bits (62), Expect = 0.46
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 89 KIVELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKE 226
+I +L EE + + ++ LE E+AN E+Y+ Q + L +E
Sbjct: 147 QITDLLEEQQQLKLEIERLEAETERANSETEQYEKQKEALEEEYEE 192
>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 29.1 bits (62), Expect = 0.46
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 293 KTNLSPKRR-NTRTSETIWIPPS*SSFSRNKLPLYKDP 403
K NL PKR NTR S + IPP +S S P + P
Sbjct: 6 KLNLPPKRTINTRLSTPVHIPPPINSESTRITPQHGSP 43
>SPAC23A1.04c |mnl1||alpha mannosidase-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 28.7 bits (61), Expect = 0.61
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 89 KIVELEEELRVVGNNLKS-LEVSEEKANQREEEYKNQIKTLTTRLKE 226
K+ E +R++G L S + SEEK + YK ++ TL T L E
Sbjct: 125 KVQVFEATIRILGGLLSSHIFASEEKYGFQIPLYKGELLTLATELAE 171
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 235 TCRVRRASVQKLQKEVDRLEDELVAEKEKYKDIGDDLD 348
T R S+ ++EV++L DE+ E+Y D + D
Sbjct: 586 TIRENEESISLFKEEVEKLTDEITQLSERYNDKCHEFD 623
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 241 RVRRASVQKLQKEVDRLEDELVAEKEK 321
R++ A +KLQ+ +L DE +AE EK
Sbjct: 497 RLQEAEAKKLQERTSKLTDEDIAEIEK 523
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +1
Query: 259 VQKLQKEVDRLEDELVAEKEKYKDIGDDLDTAFVEL 366
+QK +KE +LE++L + KY++ ++ + V+L
Sbjct: 157 IQKAKKEESKLEEDLRNARAKYEESLEEFEDRMVQL 192
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 146 EVSEEKANQREEEYKNQIKTLTTRLKEAEARAEFAE 253
++SEE+A+QR++ K I+ EAEA+ + E
Sbjct: 516 QISEEEASQRKDAIKLAIQQRIQEKAEAEAKRKAEE 551
>SPBC577.05c |rec27|mug41|meiotic recombination protein
Rec27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 26.6 bits (56), Expect = 2.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 134 LKSLEVSEEKANQREEEYKNQIKTLTTRLKEAEARAEFAELPCRN 268
+K + ++K + E + NQIK L EAR + E+ RN
Sbjct: 65 IKDVSQVQQKIKEFEIQKANQIKQLNEEKLSIEARKQQLEIEIRN 109
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 131 NLKSLEVSEEKANQREEEYKNQIK 202
NLK++E +K +Q E EYK I+
Sbjct: 35 NLKNIERRVKKYDQIESEYKTNIE 58
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +1
Query: 256 SVQKLQKEVDRLEDELVAEKEKYKDIGDDLDTAFVELILKE 378
+++ KEV ++ + +K+K D DD++ + E +L E
Sbjct: 69 TIESDTKEVQNIKPKSKKKKKKLNDSSDDIEGKYFEELLAE 109
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.8 bits (54), Expect = 4.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 101 LEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKEAE 232
LEEE V+ + L++LE NQI++L T+ +E +
Sbjct: 433 LEEERDVLESKLQTLEDDNNSLRLMTSSLGNQIESLRTQNREID 476
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 25.8 bits (54), Expect = 4.3
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 442 QYSNIDSNFNFVFLTLSY 495
Q +NI NFN F+TLSY
Sbjct: 490 QITNIMHNFNLEFVTLSY 507
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.4 bits (53), Expect = 5.7
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +2
Query: 92 IVELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKEAEARAEFAELPCRNC 271
I +LE+ + + L+SLE K + ++ +NQ K + +L + +A E N
Sbjct: 514 IAQLEQIIEELHEELRSLEEESIKESSATQQNENQHKRSSRKLLYEDKQA-IQEAHTINT 572
Query: 272 KRR 280
KR+
Sbjct: 573 KRK 575
>SPAC57A10.09c |||High-mobility group non-histone chromatin
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 25.4 bits (53), Expect = 5.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 146 EVSEEKANQREEEYKNQIKTLTTRLKEAE 232
E EEKA Q +E Y+ + K T+L E
Sbjct: 63 EPYEEKARQDKERYERERKEYDTKLANGE 91
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 25.4 bits (53), Expect = 5.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 251 RRTRHVLQPPSDGW 210
RR RHVL P +GW
Sbjct: 220 RRKRHVLVQPQEGW 233
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 25.4 bits (53), Expect = 5.7
Identities = 17/72 (23%), Positives = 29/72 (40%)
Frame = +2
Query: 215 RLKEAEARAEFAELPCRNCKRRSIGLKTNLSPKRRNTRTSETIWIPPS*SSFSRNKLPLY 394
RL+++ E PC C + I +L P +RN + + + S +
Sbjct: 29 RLRKSRCVVESIGNPCLLCTQLKIPCTYHLPPIKRNKQKKQQDSVSDDTPSEATTTTNDD 88
Query: 395 KDPKSECPGNTI 430
+DPK GN +
Sbjct: 89 RDPKYNALGNNL 100
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 259 VQKLQKEVDRLEDELVAEKEKYKDIGDDLD 348
VQ L++E D +E +L +KY + +LD
Sbjct: 123 VQSLERERDDMEQKLEEMTDKYTKVKAELD 152
>SPAC1B3.01c |||uracil phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 219
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Frame = -1
Query: 465 IRIYV*ILNRGL----MVLPGHSDFGSLYNGS 382
IRI +++ GL ++PG DFG +Y G+
Sbjct: 186 IRIVTAVIDEGLDNNGYIVPGLGDFGDIYFGT 217
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,035,471
Number of Sequences: 5004
Number of extensions: 39139
Number of successful extensions: 185
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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