Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0506
         (558 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    32   0.015
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    29   0.10 
DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific doub...    25   1.3  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    24   2.9  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    23   5.1  
AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          23   9.0  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   9.0  

>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 31.9 bits (69), Expect = 0.015
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 164 PSPLRLPEISGCYQRHGAPPQAQRFWIRRTRHA 66
           P PL + E + C+QR+ A P+A R  IRR   A
Sbjct: 842 PHPLLIKEDARCHQRYLADPEASRAVIRREERA 874


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 29.1 bits (62), Expect = 0.10
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 98   ELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKEAE-ARAEFAEL 256
            +LEEE   +   L+ ++++ EKA++     K +I  L  R  E +  R EF ++
Sbjct: 960  QLEEEANKLREELEEMKLAIEKAHEGSSSIKKEIVALQKREAEGKMKRLEFEQI 1013


>DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 622

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 134 LKSLEVSEEKANQREEEYKNQIKTLTTRLKEA 229
           LKS +   +KA+QR +E K  IKT    +K +
Sbjct: 219 LKSADGDVQKAHQRIDEGKRTIKTYEALVKSS 250


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 122 VGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKEAE-ARAEFAE 253
           +  N K +E  + +A +R+E+  + IKT    L+E +  +AE ++
Sbjct: 427 IEENYKKIESEKNEALKRQEKLIDHIKTSRLGLEEQKRIKAELSQ 471


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 429 MVLPGHSDFGSLYNGSLFL-ENELYEGGIQIVSDVLVFLLFGDKFVFKP 286
           M  P  SD   +  G L+  EN +    I + S+ +V +LFG K  F P
Sbjct: 440 MFEPPVSDPNLIEGGLLYTPENLINLSDISVSSETVVQVLFGLKRSFTP 488


>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +1

Query: 262  QKLQKEVDRLEDELVAEKEKYKDIGDD 342
            ++++KEVD  ED+   E+E+ ++  D+
Sbjct: 955  KEVKKEVDAAEDDEEEEEEEQEEEEDE 981


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 262 QKLQKEVDRLEDELVAEKEKYKDI 333
           Q++QK  DRL++   A K+  KD+
Sbjct: 258 QEIQKAQDRLKNAQKALKDAKKDV 281


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 498,941
Number of Sequences: 2352
Number of extensions: 9488
Number of successful extensions: 33
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52142868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)