Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0506
(558 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02930.1 68416.m00288 expressed protein ; expression support... 35 0.032
At5g48660.1 68418.m06022 expressed protein ; expression supporte... 31 0.52
At3g43583.1 68416.m04636 hypothetical protein 31 0.52
At1g06530.1 68414.m00692 myosin heavy chain-related similar to m... 31 0.52
At4g24970.1 68417.m03578 ATP-binding region, ATPase-like domain-... 30 0.91
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 30 0.91
At1g13220.1 68414.m01533 nuclear matrix constituent protein-rela... 30 0.91
At3g12020.1 68416.m01490 kinesin motor protein-related similar t... 29 1.6
At1g68910.1 68414.m07886 expressed protein similar to Myosin hea... 29 1.6
At1g20850.1 68414.m02612 cysteine endopeptidase, papain-type (XC... 29 1.6
At5g54480.1 68418.m06784 hypothetical protein 29 2.1
At4g02710.1 68417.m00366 kinase interacting family protein simil... 29 2.1
At1g69710.1 68414.m08022 zinc finger protein, putative / regulat... 29 2.1
At1g17140.2 68414.m02089 tropomyosin-related similar to Tropomyo... 29 2.1
At1g17140.1 68414.m02088 tropomyosin-related similar to Tropomyo... 29 2.1
At3g24390.1 68416.m03063 Ulp1 protease family protein contains P... 28 3.7
At1g52410.2 68414.m05915 caldesmon-related weak similarity to Ca... 28 3.7
At3g13160.1 68416.m01646 pentatricopeptide (PPR) repeat-containi... 28 4.9
At3g05270.1 68416.m00575 expressed protein similar to endosome-a... 28 4.9
At5g28490.1 68418.m03466 expressed protein contains Pfam profile... 27 6.4
At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei... 27 6.4
At3g15700.1 68416.m01990 disease resistance protein, putative si... 27 6.4
At5g65410.1 68418.m08226 zinc finger homeobox family protein / Z... 27 8.5
At5g58550.1 68418.m07333 tetratricopeptide repeat (TPR)-containi... 27 8.5
At5g56210.1 68418.m07014 expressed protein ; expression supporte... 27 8.5
At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 ... 27 8.5
At5g16590.1 68418.m01942 leucine-rich repeat transmembrane prote... 27 8.5
At4g17980.1 68417.m02676 no apical meristem (NAM) family protein... 27 8.5
At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to... 27 8.5
At2g43440.1 68415.m05399 F-box family protein contains Pfam PF00... 27 8.5
At1g47900.1 68414.m05334 expressed protein 27 8.5
At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger) fa... 27 8.5
>At3g02930.1 68416.m00288 expressed protein ; expression supported
by MPSS
Length = 806
Score = 35.1 bits (77), Expect = 0.032
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +2
Query: 11 DEVARKLAMVEADLXXXXXXXXXXXXKIVELEEELRVVGNNLKSLEVSEEKANQREEEYK 190
+E+A KL DL K+ ELE + + +L++ +++E A+ +E++
Sbjct: 253 NEIALKLGAEIVDLKRDLENARSLEAKVKELEMIIEQLNVDLEAAKMAESYAHGFADEWQ 312
Query: 191 NQIKTLTTRLKEA 229
N+ K L RL+EA
Sbjct: 313 NKAKELEKRLEEA 325
>At5g48660.1 68418.m06022 expressed protein ; expression supported
by MPSS
Length = 219
Score = 31.1 bits (67), Expect = 0.52
Identities = 15/50 (30%), Positives = 30/50 (60%)
Frame = +2
Query: 104 EEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKEAEARAEFAE 253
+EEL + L+ EEKA++ ++ + ++ ++T RLK+AE ++ E
Sbjct: 126 KEELEQLQKERTELKEKEEKASKEIKQLQVKLSSITERLKKAETESKEKE 175
>At3g43583.1 68416.m04636 hypothetical protein
Length = 100
Score = 31.1 bits (67), Expect = 0.52
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 110 PPQAQRFWIRRTRHAPRRAPSQPQPWPAYEQP 15
PP + F R+ H P P P+P P+ E P
Sbjct: 7 PPHCRGFHCHRSNHRPPEKPPSPEPPPSPEPP 38
>At1g06530.1 68414.m00692 myosin heavy chain-related similar to
myosin heavy chain (GI:1408194) {Placopecten
magellanicus}; similar to Myosin heavy chain, clone 203
(Fragment) (SP:P39922){Hydra attenuata}; contains one
transmembrane domain
Length = 323
Score = 31.1 bits (67), Expect = 0.52
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +2
Query: 11 DEVARKLAMVEADLXXXXXXXXXXXXKIVELEEELRVVGNNLKSLEVSEEKANQREEEY- 187
D + RK+ + A++ K+ E+E E+ K LE +A++ E E
Sbjct: 53 DAINRKIESLTAEIEELRGAESKAKRKMGEMEREIDKSDEERKVLEAIASRASELETEVA 112
Query: 188 KNQIKTLTTRLKEAEARAEFAEL 256
+ Q + +T R + EA AE +L
Sbjct: 113 RLQHELITARTEGEEATAEAEKL 135
>At4g24970.1 68417.m03578 ATP-binding region, ATPase-like
domain-containing protein low similarity to microrchidia
[Mus musculus] GI:5410255; contains Pfam profile
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein
Length = 707
Score = 30.3 bits (65), Expect = 0.91
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +2
Query: 101 LEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKEAEARAEFAELPCRN 268
L+EELR K+LEV + + Q+ EE K + + L E R + E RN
Sbjct: 623 LQEELRREKERRKALEVEVQLSRQKIEEMKKEQENLIEIFSEERDRRDGEEEVLRN 678
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 30.3 bits (65), Expect = 0.91
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = +2
Query: 11 DEVARKLAMVEADLXXXXXXXXXXXXKIVELEEELRVVGNNL----KSLEVSEEKANQRE 178
+E +KL E + K+ E+E++L++ L + +++S K+ + E
Sbjct: 266 NEWEKKLQGKEESITEQKRNLNQREEKVNEIEKKLKLKEKELEEWNRKVDLSMSKSKETE 325
Query: 179 EEYKNQIKTLTTRLKEA 229
E+ +++ LTT+ KEA
Sbjct: 326 EDITKRLEELTTKEKEA 342
>At1g13220.1 68414.m01533 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 391
Score = 30.3 bits (65), Expect = 0.91
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = +2
Query: 11 DEVARKLAMVEADLXXXXXXXXXXXXKIVELEEELRVVGNNL----KSLEVSEEKANQRE 178
+E +KL E + K+ E+E++L++ L + +++S K+ + E
Sbjct: 279 NEWEKKLQGKEESITEQKRNLNQREEKVNEIEKKLKLKEKELEEWNRKVDLSMSKSKETE 338
Query: 179 EEYKNQIKTLTTRLKEA 229
E+ +++ LTT+ KEA
Sbjct: 339 EDITKRLEELTTKEKEA 355
>At3g12020.1 68416.m01490 kinesin motor protein-related similar to
putative kinesin heavy chain GB:AAD23684 GI:4567271 from
[Arabidopsis thaliana]
Length = 1030
Score = 29.5 bits (63), Expect = 1.6
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +2
Query: 95 VELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKEAEARAEFAELPCRNCK 274
+EL+ ELR+ S E + + QRE E + ++ T+ +EA E A + K
Sbjct: 945 MELKRELRMSKERELSYEAALGEKEQREAELERILE--ETKQREAYLENELANMWVLVSK 1002
Query: 275 -RRSIGLKTNLSPKRRNTRTSE 337
RRS G + +S TR +E
Sbjct: 1003 LRRSQGADSEISDSISETRQTE 1024
>At1g68910.1 68414.m07886 expressed protein similar to Myosin heavy
chain, nonmuscle type B (Cellular myosin heavy chain,
type B) (Nonmuscle myosin heavy chain-B) (NMMHC-B)
(Swiss-Prot:Q27991) [Bos taurus]; contains 1
transmembrane domain
Length = 627
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = +2
Query: 104 EEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKEAEARAEFAELPCRNCKRRS 283
E++L+ LKS+ S+++ E +N +++ L EAE+RAE E + +
Sbjct: 321 EQKLKNTDLELKSVNASKQEILVHLAEMENANESVKENLFEAESRAESGEAKIKELDAAN 380
Query: 284 IGLKTNLS 307
+ L L+
Sbjct: 381 LELTEELN 388
>At1g20850.1 68414.m02612 cysteine endopeptidase, papain-type (XCP2)
identical to papain-type cysteine endopeptidase XCP2
GI:6708183 from [Arabidopsis thaliana]
Length = 356
Score = 29.5 bits (63), Expect = 1.6
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Frame = +2
Query: 89 KIVELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKEAEAR----AEFAEL 256
K++EL E + N K+ E EEK R E +K+ +K + K+ ++ EFA+L
Sbjct: 46 KLIELFENW--ISNFEKAYETVEEKF-LRFEVFKDNLKHIDETNKKGKSYWLGLNEFADL 102
Query: 257 PCRNCKRRSIGLKTNL 304
K+ +GLKT++
Sbjct: 103 SHEEFKKMYLGLKTDI 118
>At5g54480.1 68418.m06784 hypothetical protein
Length = 720
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 89 KIVELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKE 226
K++ + EE+R+ L +V EEK R E +++ T L+E
Sbjct: 598 KVLSVVEEMRLRFQGLGFKQVEEEKQRMRTERLSKELEKKTKELEE 643
>At4g02710.1 68417.m00366 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1111
Score = 29.1 bits (62), Expect = 2.1
Identities = 27/103 (26%), Positives = 40/103 (38%)
Frame = +2
Query: 23 RKLAMVEADLXXXXXXXXXXXXKIVELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIK 202
R LA E D I LEE LR + + + EKA E K +
Sbjct: 328 RSLAKAETDKETALIQYRQCLNTISNLEERLRKAEEDARLINERAEKAGVEVENLK---Q 384
Query: 203 TLTTRLKEAEARAEFAELPCRNCKRRSIGLKTNLSPKRRNTRT 331
T++ +K+ EA +EL + C LK L + T++
Sbjct: 385 TVSKLIKDKEA----SELQFQQCLNIIASLKVKLHHAQEETQS 423
>At1g69710.1 68414.m08022 zinc finger protein, putative / regulator of
chromosome condensation (RCC1) family protein similar to
zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1028
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 89 KIVELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKE-AEARAE 244
K +LEEEL LK + + K I++LTT+LKE AE +++
Sbjct: 859 KAHQLEEELEKTKRQLKVVTAMAADEAEENRSAKEVIRSLTTQLKEMAEKQSQ 911
>At1g17140.2 68414.m02089 tropomyosin-related similar to Tropomyosin
1. [Baker's yeast](SP:P17536) {Saccharomyces cerevisiae}
Length = 344
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/52 (23%), Positives = 25/52 (48%)
Frame = +2
Query: 89 KIVELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKEAEARAE 244
K+V E+E++++ L +E E + E KNQ+ + + +A +
Sbjct: 164 KLVAKEDEIKMLKARLYDMEKEHESLGKENESLKNQLSDSASEISNVKANED 215
>At1g17140.1 68414.m02088 tropomyosin-related similar to Tropomyosin
1. [Baker's yeast](SP:P17536) {Saccharomyces cerevisiae}
Length = 344
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/52 (23%), Positives = 25/52 (48%)
Frame = +2
Query: 89 KIVELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKEAEARAE 244
K+V E+E++++ L +E E + E KNQ+ + + +A +
Sbjct: 164 KLVAKEDEIKMLKARLYDMEKEHESLGKENESLKNQLSDSASEISNVKANED 215
>At3g24390.1 68416.m03063 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At4g05280,
At1g25886, At4g03300
Length = 1139
Score = 28.3 bits (60), Expect = 3.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -2
Query: 122 RHGAPPQAQRFWIRRTRHAPRRAPSQP 42
+ PPQ + +++R R+AP +P +P
Sbjct: 407 KQSRPPQLEETYVKRKRNAPGPSPKEP 433
>At1g52410.2 68414.m05915 caldesmon-related weak similarity to
Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
Length = 759
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 98 ELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRL-KEAEARAE 244
E+E E L+ L S+ A+ EEE+ + ++L + +E EA E
Sbjct: 264 EIEREFEAASKGLEQLRASDSTADNNEEEHAAKGQSLLEEIEREFEAATE 313
>At3g13160.1 68416.m01646 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 394
Score = 27.9 bits (59), Expect = 4.9
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 143 LEVSEEKANQREEEYKNQIKTLTTRLKEAE-ARAEFAELPCRNCKRRSIGLKTNLS 307
LE + N +E + +I L R+ E A+ F E+P RNCKR ++ L+
Sbjct: 94 LEEQNKYPNMSKEGFVARIINLYGRVGMFENAQKVFDEMPERNCKRTALSFNALLN 149
>At3g05270.1 68416.m00575 expressed protein similar to
endosome-associated protein (EEA1) (GI:1016368) [Homo
sapiens]; similar to smooth muscle myosin heavy chain
(GI:4417214) [Homo sapiens; contains Pfam profile
PF05911: Plant protein of unknown function (DUF869)
Length = 615
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 158 EKANQREEEYKNQIKTLTTRLKEAEARAEFAEL 256
EK+N + K+++KT R+ E E + E E+
Sbjct: 335 EKSNAHVNQLKHELKTSLRRISELEEKVEMVEV 367
>At5g28490.1 68418.m03466 expressed protein contains Pfam profile
PF04852: Protein of unknown function (DUF640)
Length = 190
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -2
Query: 182 PLRVGWPS-PLRLPEISGCYQRHGAPPQAQRFWIRRTR 72
PLR W S + + Y+ +G PP+A F R R
Sbjct: 93 PLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVR 130
>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
protein-related similar to matrix-localized MAR DNA
binding protein MFP1 GI:1771158 from [Lycopersicon
esculentum]
Length = 726
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 250 RASVQKLQKEVDRLEDELVAEKEKYKDIGDDLDTAFVEL 366
+ +V L KEV +E +++ E+E K + DL+ A L
Sbjct: 563 KKTVLSLNKEVKGMEKQILMEREARKSLETDLEEAVKSL 601
>At3g15700.1 68416.m01990 disease resistance protein, putative
similar to NBS/LRR disease resistance protein
[Arabidopsis thaliana] gi|3309619|gb|AAC26125; contains
Pfam profile: PF00931 NB-ARC domain
Length = 375
Score = 27.5 bits (58), Expect = 6.4
Identities = 7/22 (31%), Positives = 17/22 (77%)
Frame = -1
Query: 555 IDNKLVYSKINKYHHVVWIFIT 490
++N+L+ K+N + V+W+F++
Sbjct: 180 VNNRLLQHKLNGFDFVIWVFVS 201
>At5g65410.1 68418.m08226 zinc finger homeobox family protein /
ZF-HD homeobox family protein similar to hypothetical
proteins (GP|4220524)(GP|3184285|)(Arabidopsis); ZP-HD
homeobox family protein GP|13374061 (Flaveria
bidentis);GP:5091602 {Oryza sativa}
Length = 279
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -2
Query: 176 RVGWPSPLRLPEISGCY-QRHGAPPQAQRFWIRRTRHAPRRAPS 48
R+GW + E+ + Q G P Q + W+ +H ++PS
Sbjct: 212 RIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHTLGKSPS 255
>At5g58550.1 68418.m07333 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 925
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 128 NNLKSLEVSEEKANQREEEYKNQIKTLTTRLKEAEARAEF 247
NNL S+ ++ +Q E YKN I+ R ++ AR F
Sbjct: 742 NNLGSIYINLGMLDQAETAYKNAIEIKHIRARQGLARVYF 781
>At5g56210.1 68418.m07014 expressed protein ; expression supported
by MPSS
Length = 509
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +2
Query: 89 KIVELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKEAE 232
++ L+ E+ + NN++ LE+ E+A + E + QI+ L + + +E
Sbjct: 342 ELTSLDSEILNLVNNVEHLEIKLEEAKRILEVKETQIRELESTINVSE 389
>At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 447
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 283 DRLEDELVAEKEKYKDIGDDLDTAF 357
D LEDE +A++ D+ DD++ AF
Sbjct: 7 DDLEDEYMADEYDMDDLEDDMNAAF 31
>At5g16590.1 68418.m01942 leucine-rich repeat transmembrane protein
kinase, putative
Length = 625
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -3
Query: 343 DRLRCPCISPFRRQVRLQAYRPPFAVSARKLGELGTCFS 227
D P ISP R+ YR P ARK+ + +S
Sbjct: 486 DYCLAPMISPTSTPNRIDGYRAPEVTDARKISQKADVYS 524
>At4g17980.1 68417.m02676 no apical meristem (NAM) family protein
NAM (GI:6066595) [Petunia x hybrida]
Length = 262
Score = 27.1 bits (57), Expect = 8.5
Identities = 20/81 (24%), Positives = 35/81 (43%)
Frame = +2
Query: 173 REEEYKNQIKTLTTRLKEAEARAEFAELPCRNCKRRSIGLKTNLSPKRRNTRTSETIWIP 352
++ E K K+L + E + + ++ L C+ + +++ P T S +IWI
Sbjct: 159 KKNELKKNSKSLKNK-NEQDIGSCYSSLATSPCRDEASQIQS-FKPSS-TTNDSSSIWIS 215
Query: 353 PS*SSFSRNKLPLYKDPKSEC 415
P S P K+ SEC
Sbjct: 216 PDFILDSSKDYPQIKEVASEC 236
>At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to
homeotic protein HAT 3.1 (GI:11994474) [Arabidopsis
thaliana]
Length = 723
Score = 27.1 bits (57), Expect = 8.5
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +1
Query: 253 ASVQKL--QKEVDRLEDELVAEKEKYKDIGDDLDTAFVELILKE 378
+S++K+ +KE++R E++ K K +D+ LDT E L E
Sbjct: 209 SSLEKIRPEKELERATKEILRRKLKIRDLFQHLDTLCAEGSLPE 252
>At2g43440.1 68415.m05399 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 791
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 15 RLLVSWPWLRLTWSAPRSVPSPAN 86
R++VSWPW + W P SV N
Sbjct: 673 RVVVSWPWQK-RWFTPVSVSKQGN 695
>At1g47900.1 68414.m05334 expressed protein
Length = 1054
Score = 27.1 bits (57), Expect = 8.5
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +2
Query: 158 EKANQREEEYKNQIKTLTTRLKEAEARAEFAELPCRNCKRRSIGLKTNLSPKRRNTRTSE 337
EKA+ KN ++++T AE RA + + C R+ LK + K + S+
Sbjct: 151 EKADAEALALKNTLESVTLSKLTAEDRAAHLDGALKECMRQIRNLKKDHEVKLHDVALSK 210
Query: 338 T 340
T
Sbjct: 211 T 211
>At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger); weak similarity to
interaptin (GI:3549261) [Dictyostelium discoideum] weak
similarity to Axoneme-associated protein mst101(2)
(Swiss-Prot:Q08696) [Drosophila hydei]
Length = 711
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 271 QKEVDRLEDELVAEKEKYK 327
+K++ +L+DE+ AEKEK K
Sbjct: 505 EKQILKLQDEITAEKEKIK 523
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,735,313
Number of Sequences: 28952
Number of extensions: 216536
Number of successful extensions: 960
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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