Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0505
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    40   4e-04
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    28   1.8  
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    27   4.0  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   5.4  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.4  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    26   5.4  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    26   7.1  

>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
 Frame = +2

Query: 245 RVVHEWRQIVSEFISTLLLLVLGC----MACIPHAGYLPQPPIYGALGFGLVVSFNVQIF 412
           ++ H +R+  +EF+ TL+L+V G      A + +        +  A GFG ++   V I 
Sbjct: 305 KIRHFFREGFAEFLGTLVLVVFGVGSNLQATVTNGAGGSFESLSFAWGFGCMLG--VYIA 362

Query: 413 GHISGAHMNPSVTLASLIW 469
           G ISG H+NP+VT++  I+
Sbjct: 363 GGISGGHVNPAVTISLAIF 381


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -2

Query: 668  QFKNERAAVKTASTIKA*NNV-ISVRGNVIQTPSMSMCE 555
            QFKN ++ +   ST  A NN+ ++ R   I++PS+ +CE
Sbjct: 1784 QFKNSKS-ISNVSTHLASNNLNLASRDTPIKSPSVGICE 1821


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -3

Query: 301 KQQRGNKLRYDLSPLMHHAYIALHPDACETSDRTLFSITSMTDWGLVA 158
           K+   NKL   LS L   A I  H    ET +R    ++S+  W L A
Sbjct: 162 KETFENKLGVQLSYLDGDAGIIAHKQTQETHERIRNWLSSLNSWQLAA 209


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 419  ISGAHMNPSVTLASLIWGAISFPLAIAFIVHNAQERF 529
            +SG  +NP   +A++ W      LAIAF+V+     F
Sbjct: 2129 VSGK-LNPQPWMAAITWPIALVLLAIAFVVYRGLPNF 2164


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 382 FGSLV*CPNIWTYIWSAHESVRHTGLAD 465
           FGSL+ C  +W +++S   S RH  L D
Sbjct: 358 FGSLIACAPMWDFVYS---SSRHNTLLD 382


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 160 AETVIFADSLNFDDTENHITKTQQGTTANQVFCSFFFFRT 41
           A    F  S N +DT   +T+T + +T N  F S+   RT
Sbjct: 458 ASNTHFFLSENQNDTSERLTRTLRKSTKNYTFGSYILGRT 497


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 153 VSATNPQSVIEVIENKVRSDVSQASGCRAMYA-WCMSGDK 269
           VS  NPQ V  V+EN+ R++V    G +  +  WC SG +
Sbjct: 167 VSMHNPQHVFTVLENR-RNNV---EGPKVYFGHWCGSGSR 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,307,593
Number of Sequences: 5004
Number of extensions: 69913
Number of successful extensions: 184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)