Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0505
(789 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g16850.1 68415.m01937 plasma membrane intrinsic protein, puta... 48 7e-06
At4g19030.1 68417.m02804 major intrinsic family protein / MIP fa... 48 9e-06
At4g18910.1 68417.m02788 aquaglyceroporin / NOD26-like major int... 47 1e-05
At1g80760.1 68414.m09475 major intrinsic family protein / MIP fa... 46 2e-05
At2g34390.2 68415.m04212 major intrinsic family protein / MIP fa... 44 9e-05
At2g34390.1 68415.m04211 major intrinsic family protein / MIP fa... 44 9e-05
At5g37820.1 68418.m04554 major intrinsic family protein / MIP fa... 43 3e-04
At5g37810.1 68418.m04553 major intrinsic family protein / MIP fa... 43 3e-04
At4g10380.1 68417.m01703 major intrinsic family protein / MIP fa... 43 3e-04
At3g47440.1 68416.m05158 major intrinsic family protein / MIP fa... 43 3e-04
At1g31885.1 68414.m03919 major intrinsic family protein / MIP fa... 43 3e-04
At4g35100.1 68417.m04986 plasma membrane intrinsic protein (SIMI... 41 0.001
At3g06100.1 68416.m00700 major intrinsic family protein / MIP fa... 41 0.001
At2g25810.1 68415.m03097 tonoplast intrinsic protein, putative s... 41 0.001
At3g26520.1 68416.m03310 tonoplast intrinsic protein, putative s... 40 0.002
At5g47450.1 68418.m05853 major intrinsic family protein / MIP fa... 39 0.003
At3g53420.1 68416.m05895 plasma membrane intrinsic protein 2A (P... 39 0.003
At3g16240.1 68416.m02049 delta tonoplast integral protein (delta... 39 0.004
At2g45960.1 68415.m05714 plasma membrane intrinsic protein 1B (P... 39 0.004
At2g39010.1 68415.m04796 aquaporin, putative similar to plasma m... 39 0.004
At3g61430.1 68416.m06880 plasma membrane intrinsic protein 1A (P... 38 0.006
At3g54820.1 68416.m06068 aquaporin, putative similar to plasma m... 38 0.010
At4g17340.1 68417.m02601 major intrinsic family protein / MIP fa... 37 0.018
At2g36830.1 68415.m04516 major intrinsic family protein / MIP fa... 37 0.018
At2g04675.1 68415.m00477 expressed protein 36 0.023
At5g60660.1 68418.m07613 major intrinsic family protein / MIP fa... 36 0.031
At4g01470.1 68417.m00190 major intrinsic family protein / MIP fa... 35 0.054
At1g17810.2 68414.m02205 major intrinsic family protein / MIP fa... 35 0.054
At1g17810.1 68414.m02204 major intrinsic family protein / MIP fa... 35 0.054
At2g37170.1 68415.m04560 plasma membrane intrinsic protein 2B (P... 35 0.071
At1g01620.1 68414.m00079 plasma membrane intrinsic protein 1C (P... 35 0.071
At4g23400.1 68417.m03373 major intrinsic family protein / MIP fa... 34 0.094
At2g37180.1 68415.m04561 plasma membrane intrinsic protein 2C (P... 34 0.094
At2g29870.1 68415.m03627 major intrinsic family protein / MIP fa... 33 0.16
At4g00430.2 68417.m00060 plasma membrane intrinsic protein, puta... 33 0.22
At4g00430.1 68417.m00059 plasma membrane intrinsic protein, puta... 33 0.22
At1g73190.1 68414.m08470 tonoplast intrinsic protein, alpha / al... 31 1.2
At3g58130.1 68416.m06482 N-acetylglucosaminyl-phosphatidylinosit... 30 2.0
At2g24010.1 68415.m02868 serine carboxypeptidase S10 family prot... 29 3.5
At1g55240.1 68414.m06309 expressed protein contains Pfam profile... 29 3.5
At3g51870.1 68416.m05688 mitochondrial substrate carrier family ... 29 4.6
At4g38530.1 68417.m05454 phosphoinositide-specific phospholipase... 28 8.1
At1g80630.1 68414.m09462 leucine-rich repeat family protein 28 8.1
>At2g16850.1 68415.m01937 plasma membrane intrinsic protein,
putative very strong similarity to plasma membrane
intrinsic protein (SIMIP) [Arabidopsis thaliana]
GI:2306917
Length = 278
Score = 48.0 bits (109), Expect = 7e-06
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Frame = +2
Query: 260 WRQIVSEFISTLLLLVLGCMACIPHAGYLPQPPIYGALG----FGLVVSFNVQIFGHISG 427
+R I++EFI+TLL L + I H G LG FG ++ V ISG
Sbjct: 35 YRAIIAEFIATLLFLYVTVATVIGHKNQTGPCGGVGLLGIAWAFGGMIFVLVYCTAGISG 94
Query: 428 AHMNPSVTLASLIWGAISFPLAIAFIV 508
H+NP+VT + +S P A+A++V
Sbjct: 95 GHINPAVTFGLFLARKVSLPRAVAYMV 121
>At4g19030.1 68417.m02804 major intrinsic family protein / MIP
family protein contains Pfam profile: MIP PF00230;
identical to cDNA NLM1 protein GI:2677613
Length = 296
Score = 47.6 bits (108), Expect = 9e-06
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +2
Query: 263 RQIVSEFISTLLLLVLGCMACIPHAGYLPQPPIYG-ALGFGLVVSFNVQIFGHISGAHMN 439
+++++EF+ T L+ GC + + + + G A+ +GL + + GHISGAH+N
Sbjct: 55 QKLIAEFLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHIN 114
Query: 440 PSVTLASLIWGAISFPLAIAFIV 508
P+VT+A G A+++
Sbjct: 115 PAVTIAFASCGRFPLKQVPAYVI 137
>At4g18910.1 68417.m02788 aquaglyceroporin / NOD26-like major
intrinsic protein 2 (NLM2) contains Pfam profile: MIP
PF00230; similar to SP:P08995 {Glycine max} Nodulin-26
(N-26); identical to cDNA aquaglyceroporin (nlm2 gene)
GI:11071655, aquaglyceroporin [Arabidopsis thaliana]
GI:11071656
Length = 294
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +2
Query: 263 RQIVSEFISTLLLLVLGCMACIPHAGYLPQPPIYG-ALGFGLVVSFNVQIFGHISGAHMN 439
+++++E + T L+ GC A + + + G A+ +GL V V GHISGAH N
Sbjct: 52 QKLMAEVLGTYFLIFAGCAAVAVNTQHDKAVTLPGIAIVWGLTVMVLVYSLGHISGAHFN 111
Query: 440 PSVTLASLIWGAISFPLAIAFIV 508
P+VT+A G A+++
Sbjct: 112 PAVTIAFASCGRFPLKQVPAYVI 134
>At1g80760.1 68414.m09475 major intrinsic family protein / MIP
family protein contains Pfam profile: MIP PF00230
Length = 305
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +2
Query: 260 WRQIVSEFISTLLLLVLGCMACIPHAGYLPQPPIYG-ALGFGLVVSFNVQIFGHISGAHM 436
+R++ +EF+ TL+L+ G I + + G A GL V + GHISGAH+
Sbjct: 79 YRKLGAEFVGTLILIFAGTATAIVNQKTDGAETLIGCAASAGLAVMIVILSTGHISGAHL 138
Query: 437 NPSVTLA 457
NP+VT+A
Sbjct: 139 NPAVTIA 145
>At2g34390.2 68415.m04212 major intrinsic family protein / MIP
family protein contains Pfam profile: MIP PF00230; an
isoform contains a non-consensus GA-AG intron
Length = 288
Score = 44.4 bits (100), Expect = 9e-05
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = +2
Query: 251 VHEWRQIVSEFISTLLLLVLGCMACIPHAGYLPQPPIYG-ALGFGLVVSFNVQIFGHISG 427
VH +++++E + T L+ GC A +A + + G A+ +G+V+ V GH+S
Sbjct: 44 VHFLQKLLAELVGTYYLIFAGCAAIAVNAQHNHVVTLVGIAVVWGIVIMVLVYCLGHLS- 102
Query: 428 AHMNPSVTLA 457
AH NP+VTLA
Sbjct: 103 AHFNPAVTLA 112
Score = 32.7 bits (71), Expect = 0.29
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +2
Query: 272 VSEFISTLLLLVLGCMACIPHAGYLPQPPIYGALGFGLVVSFNVQIFGHISGAHMNPSVT 451
V EFI T L+++ C + G + G V+ NV G +SGA MNP+ +
Sbjct: 174 VMEFIITGFLMLVVCAVTTTKRTV---SELEGLI-IGATVTLNVIFAGEVSGASMNPARS 229
Query: 452 LA-SLIWG 472
+ +L+WG
Sbjct: 230 IGPALVWG 237
>At2g34390.1 68415.m04211 major intrinsic family protein / MIP
family protein contains Pfam profile: MIP PF00230; an
isoform contains a non-consensus GA-AG intron
Length = 288
Score = 44.4 bits (100), Expect = 9e-05
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = +2
Query: 251 VHEWRQIVSEFISTLLLLVLGCMACIPHAGYLPQPPIYG-ALGFGLVVSFNVQIFGHISG 427
VH +++++E + T L+ GC A +A + + G A+ +G+V+ V GH+S
Sbjct: 44 VHFLQKLLAELVGTYYLIFAGCAAIAVNAQHNHVVTLVGIAVVWGIVIMVLVYCLGHLS- 102
Query: 428 AHMNPSVTLA 457
AH NP+VTLA
Sbjct: 103 AHFNPAVTLA 112
Score = 33.1 bits (72), Expect = 0.22
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +2
Query: 272 VSEFISTLLLLVLGCMACIPHAGYLPQPPIYGALGFGLVVSFNVQIFGHISGAHMNPSVT 451
V EFI T L+++ C + G + G V+ NV G +SGA MNP+ +
Sbjct: 174 VMEFIITGFLMLVVCAVTTTKR---TTEELEGLI-IGATVTLNVIFAGEVSGASMNPARS 229
Query: 452 LA-SLIWG 472
+ +L+WG
Sbjct: 230 IGPALVWG 237
>At5g37820.1 68418.m04554 major intrinsic family protein / MIP
family protein contains Pfam profile: PF00230 major
intrinsic protein (MIP)
Length = 283
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Frame = +2
Query: 263 RQIVSEFISTLLLLVLGC---MACIPHAGYLPQPPIYGALGFGLVVSFNVQIFGHISGAH 433
+++++E I T ++ GC + + + G + P I + +GL+V + GHISGAH
Sbjct: 43 QKLIAEMIGTYFIIFSGCGVVVVNVLYGGTITFPGI--CVTWGLIVMVMIYSTGHISGAH 100
Query: 434 MNPSVTLASLIW 469
NP+VT+ ++
Sbjct: 101 FNPAVTVTFAVF 112
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 371 LGFGLVVSFNVQIFGHISGAHMNPSVTLASLI 466
+ G+ + NV + G ISGA MNP+ +L I
Sbjct: 192 IAVGMTIILNVFVAGPISGASMNPARSLGPAI 223
>At5g37810.1 68418.m04553 major intrinsic family protein / MIP
family protein similar to pollen-specific membrane
integral protein SP:P49173 from [Nicotiana alata];
contains Pfam profile: MIP PF00230
Length = 283
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Frame = +2
Query: 263 RQIVSEFISTLLLLVLGC---MACIPHAGYLPQPPIYGALGFGLVVSFNVQIFGHISGAH 433
+++++E I T ++ GC + + + G + P I + +GL+V + GHISGAH
Sbjct: 43 QKLIAEMIGTYFIVFSGCGVVVVNVLYGGTITFPGI--CVTWGLIVMVMIYSTGHISGAH 100
Query: 434 MNPSVTLASLIW 469
NP+VT+ I+
Sbjct: 101 FNPAVTVTFAIF 112
Score = 30.3 bits (65), Expect = 1.5
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Frame = +2
Query: 263 RQIVSEFI-STLLLLVLGCMACIPHA-GYLPQPPIYGALGFGLVVSFNVQIFGHISGAHM 436
R +V+E I S LL+ V+ +A A G L + G+ + NV + G ISGA M
Sbjct: 160 RALVAEIIISFLLMFVISGVATDNRAVGEL------AGIAVGMTIMVNVFVAGPISGASM 213
Query: 437 NPSVTLA-SLIWG 472
NP+ +L +L+ G
Sbjct: 214 NPARSLGPALVMG 226
>At4g10380.1 68417.m01703 major intrinsic family protein / MIP
family protein contains Pfam profile: MIP PF00230
Length = 304
Score = 42.7 bits (96), Expect = 3e-04
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +2
Query: 263 RQIVSEFISTLLLLVLGCMACIPHAGYLPQPPIYG-ALGFGLVVSFNVQIFGHISGAHMN 439
R++ +EF+ T +L+ I + Y + G A GL V + GHISGAH+N
Sbjct: 78 RKLGAEFVGTFILIFTATAGPIVNQKYDGAETLIGNAACAGLAVMIIILSTGHISGAHLN 137
Query: 440 PSVTLA 457
PS+T+A
Sbjct: 138 PSLTIA 143
>At3g47440.1 68416.m05158 major intrinsic family protein / MIP
family protein contains Pfam profile: MIP PF00230
Length = 256
Score = 42.7 bits (96), Expect = 3e-04
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Frame = +2
Query: 263 RQIVSEFISTLLLLVLGCMACIPHAGYLPQPPIYGALGF-------GLVVSFNVQIFGHI 421
R VSEFIST VL + + + L + G G L +S +V I ++
Sbjct: 23 RCYVSEFISTFFF-VLAAVGSVMSSRKLMAGDVSGPFGVLIPAIANALALSSSVYISWNV 81
Query: 422 SGAHMNPSVTLASLIWGAISFPLAIAF 502
SG H+NP+VT A + G IS P A+ +
Sbjct: 82 SGGHVNPAVTFAMAVAGRISVPTAMFY 108
>At1g31885.1 68414.m03919 major intrinsic family protein / MIP
family protein contains Pfam profile: MIP PF00230
Length = 269
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +2
Query: 299 LLVLGCMACIPHAGYLPQPPIYG-ALGFGLVVSFNVQIFGHISGAHMNPSVTLA 457
++ GC A + + Y + G AL +GLVV+ + GH+SGAH NP+V++A
Sbjct: 1 MIFAGCSAIVVNETYGKPVTLPGIALVWGLVVTVMIYSIGHVSGAHFNPAVSIA 54
Score = 33.5 bits (73), Expect = 0.16
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +2
Query: 272 VSEFISTL-LLLVLGCMACIPHAGYLPQPPIYGALGFGLVVSFNVQIFGHISGAHMNPSV 448
V EFI+T L+ V+ +A A + + G + ++ G ISGA MNP+
Sbjct: 116 VMEFIATFNLMFVISAVATDKRA-----TGSFAGIAIGATIVLDILFSGPISGASMNPAR 170
Query: 449 TLA-SLIWG 472
+L +LIWG
Sbjct: 171 SLGPALIWG 179
>At4g35100.1 68417.m04986 plasma membrane intrinsic protein (SIMIP)
nearly identical to plasma membrane intrinsic protein
[Arabidopsis thaliana] GI:2306917
Length = 280
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Frame = +2
Query: 260 WRQIVSEFISTLLLLVLGCMACIPHAGYLPQPPIYGALG----FGLVVSFNVQIFGHISG 427
+R +++EFI+TLL L + I H G LG FG ++ V ISG
Sbjct: 37 YRALIAEFIATLLFLYVTVATVIGHKKQTGPCDGVGLLGIAWAFGGMIFVLVYCTAGISG 96
Query: 428 AHMNPSVTLASLIWGAISFPLAIAFIV 508
H+NP+VT + +S A+ +++
Sbjct: 97 GHINPAVTFGLFLARKVSLVRALGYMI 123
>At3g06100.1 68416.m00700 major intrinsic family protein / MIP
family protein contains Pfam profile: PF00230 major
intrinsic protein; contains non-consensus TT acceptor
splice site at exon 4
Length = 275
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Frame = +2
Query: 263 RQIVSEFISTLLLL--VLGCMACIPHAGYLPQPPIYGALGFGLVVSFNVQIFGHISGAHM 436
R +++E + T +L+ V G ++ +G Y A+ GL V V GHISGAH+
Sbjct: 46 RIVMAELVGTFILMFSVCGVISSTQLSGGHVGLLEY-AVTAGLSVVVVVYSIGHISGAHL 104
Query: 437 NPSVTLASLIWG 472
NPS+T+A ++G
Sbjct: 105 NPSITIAFAVFG 116
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 281 FISTLLLLVLGCMACIPHAGYLPQPPIYGALGF--GLVVSFNVQIFGHISGAHMNPSVTL 454
F+ + ++ +A H G P + GF G V+S V I G ISG MNP+ +L
Sbjct: 165 FVELIATSIVVFLASALHCG--PHQNLGNLTGFVIGTVISLGVLITGPISGGSMNPARSL 222
Query: 455 ASLI 466
+
Sbjct: 223 GPAV 226
>At2g25810.1 68415.m03097 tonoplast intrinsic protein, putative
similar to tonoplast intrinsic protein GI:4584429 from
[Nicotiana tabacum]
Length = 249
Score = 40.7 bits (91), Expect = 0.001
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +2
Query: 263 RQIVSEFISTLLLLVLGCMACIPHAGYLPQPPIYGALGFGLVVSFNVQIF---GHISGAH 433
+ ++ EFI+T L + G + + L + G + +F V + GHISG H
Sbjct: 19 KALIVEFITTFLFVFAGVGSAMA-TDSLVGNTLVGLFAVAVAHAFVVAVMISAGHISGGH 77
Query: 434 MNPSVTLASLIWGAIS 481
+NP+VTL L+ G IS
Sbjct: 78 LNPAVTLGLLLGGHIS 93
>At3g26520.1 68416.m03310 tonoplast intrinsic protein, putative
similar to tonoplast intrinsic protein GI:5081419 from
[Brassica napus]
Length = 253
Score = 39.5 bits (88), Expect = 0.002
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Frame = +2
Query: 209 RRLASIRMQSDVRVVHEWRQIVSEFISTLLLLVLGCMACIP------HAGYLPQPPIYGA 370
R +A +Q +V + R ++EFISTL+ + G + I + P + A
Sbjct: 4 RNIAIGGVQEEVYHPNALRAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLVAAA 63
Query: 371 LG--FGLVVSFNVQIFGHISGAHMNPSVTLASLIWGAISFPLAIAF 502
L FGL V+ V + +ISG H+NP+VT L+ G I+ I +
Sbjct: 64 LAHAFGLFVA--VSVGANISGGHVNPAVTFGVLLGGNITLLRGILY 107
>At5g47450.1 68418.m05853 major intrinsic family protein / MIP
family protein contains Pfam profile: MIP PF00230
Length = 250
Score = 39.1 bits (87), Expect = 0.003
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Frame = +2
Query: 251 VHEWRQIVSEFISTLLLLVLGCMACIPHA-----GYL-PQPPIYGALGFGLVVSFNVQIF 412
V + +SEFI+TLL + G + + A G L P + A+ + V I
Sbjct: 15 VSSLKAYLSEFIATLLFVFAGVGSAVAFAKLTSDGALDPAGLVAIAIAHAFALFVGVSIA 74
Query: 413 GHISGAHMNPSVTLASLIWGAIS 481
+ISG H+NP+VTL I G I+
Sbjct: 75 ANISGGHLNPAVTLGLAIGGNIT 97
>At3g53420.1 68416.m05895 plasma membrane intrinsic protein 2A
(PIP2A) / aquaporin PIP2.1 (PIP2.1) identical to plasma
membrane intrinsic protein 2A SP: P43286 from
[Arabidopsis thaliana]
Length = 287
Score = 39.1 bits (87), Expect = 0.003
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Frame = +2
Query: 260 WRQIVSEFISTLLLLVLGCMACIPH-------AGYLPQPPIYGALG----FGLVVSFNVQ 406
+R +++EF++TLL L + + I + AG + + G LG FG ++ V
Sbjct: 38 YRAVIAEFVATLLFLYITVLTVIGYKIQSDTDAGGVDCGGV-GILGIAWAFGGMIFILVY 96
Query: 407 IFGHISGAHMNPSVTLASLIWGAISFPLAIAFIV 508
ISG H+NP+VT + +S P A+ +I+
Sbjct: 97 CTAGISGGHINPAVTFGLFLARKVSLPRALLYII 130
>At3g16240.1 68416.m02049 delta tonoplast integral protein
(delta-TIP) identical to delta tonoplast integral
protein (delta-TIP) (GI:9279707)(GB:U39485) [Arabidopsis
thaliana] (Plant Cell 8 (4), 587-599 (1996))
Length = 250
Score = 38.7 bits (86), Expect = 0.004
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Frame = +2
Query: 263 RQIVSEFISTLLLLVLGCMACIPHA-----GYLPQPPIYG-ALGFGLVVSFNVQIFGHIS 424
R ++EFISTLL + G + I +A L P + A+ G + V I +IS
Sbjct: 19 RAYLAEFISTLLFVFAGVGSAIAYAKLTSDAALDTPGLVAIAVCHGFALFVAVAIGANIS 78
Query: 425 GAHMNPSVTLASLIWGAIS 481
G H+NP+VT + G I+
Sbjct: 79 GGHVNPAVTFGLAVGGQIT 97
>At2g45960.1 68415.m05714 plasma membrane intrinsic protein 1B
(PIP1B) / aquaporin PIP1.2 (PIP1.2) / transmembrane
protein A (TMPA) identical to plasma membrane intrinsic
protein 1B SP:Q06611 from [Arabidopsis thaliana]
Length = 286
Score = 38.7 bits (86), Expect = 0.004
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Frame = +2
Query: 260 WRQIVSEFISTLLLLVLGCMACIPHAGYLPQPPIYGALGF-GLVVSFNVQIFG------H 418
WR ++EFI+T L L + + + G P + ++G G+ +F IF
Sbjct: 51 WRAGIAEFIATFLFLYITVLTVM---GVKRSPNMCASVGIQGIAWAFGGMIFALVYCTAG 107
Query: 419 ISGAHMNPSVTLASLIWGAISFPLAIAFIV 508
ISG H+NP+VT + +S A+ +IV
Sbjct: 108 ISGGHINPAVTFGLFLARKLSLTRAVYYIV 137
>At2g39010.1 68415.m04796 aquaporin, putative similar to plasma
membrane aquaporin 2b GI:7209560 from [Raphanus sativus]
Length = 289
Score = 38.7 bits (86), Expect = 0.004
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 16/106 (15%)
Frame = +2
Query: 239 DVRVVHEW---RQIVSEFISTLLLLVLGCMACIPHAGYLPQPPI---------YGALG-- 376
+VR + +W R +++EFI+TLL L + + I G+ Q I G LG
Sbjct: 27 EVRELKKWSFYRAVIAEFIATLLFLYVTVLTVI---GFKSQTDINAGGGACASVGLLGIS 83
Query: 377 --FGLVVSFNVQIFGHISGAHMNPSVTLASLIWGAISFPLAIAFIV 508
FG ++ V ISG H+NP+VT + +S A++++V
Sbjct: 84 WAFGGMIFILVYCTAGISGGHINPAVTFGLFLASKVSLVRAVSYMV 129
>At3g61430.1 68416.m06880 plasma membrane intrinsic protein 1A
(PIP1A) / aquaporin PIP1.1 (PIP1.1) (AQ1) identical to
plasma membrane intrinsic protein 1A SP:P43285 from
[Arabidopsis thaliana]
Length = 286
Score = 38.3 bits (85), Expect = 0.006
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Frame = +2
Query: 260 WRQIVSEFISTLLLLVLGCMACIPHAGYLPQPPIYGALGF-GLVVSFNVQIFG------H 418
WR ++EFI+T L L + + + G P + ++G G+ +F IF
Sbjct: 51 WRAGIAEFIATFLFLYITVLTVM---GVKRSPNMCASVGIQGIAWAFGGMIFALVYCTAG 107
Query: 419 ISGAHMNPSVTLASLIWGAISFPLAIAFIV 508
ISG H+NP+VT + +S A+ +IV
Sbjct: 108 ISGGHINPAVTFGLFLARKLSLTRALYYIV 137
>At3g54820.1 68416.m06068 aquaporin, putative similar to plasma
membrane aquaporin GI:3551133 from [Raphanus sativus]
Length = 286
Score = 37.5 bits (83), Expect = 0.010
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Frame = +2
Query: 260 WRQIVSEFISTLLLLVLGCMACIPHAGYLP------QPPIYGALG----FGLVVSFNVQI 409
+R +++EFI+TLL L + M I + Q G LG FG ++ V
Sbjct: 37 YRALIAEFIATLLFLYVTIMTVIGYKSQTDPALNPDQCTGVGVLGIAWAFGGMIFILVYC 96
Query: 410 FGHISGAHMNPSVTLASLIWGAISFPLAIAFIV 508
ISG H+NP+VT L+ ++ A+ ++V
Sbjct: 97 TAGISGGHINPAVTFGLLLARKVTLVRAVMYMV 129
>At4g17340.1 68417.m02601 major intrinsic family protein / MIP
family protein contains Pfam profile: MIP PF00230
Length = 250
Score = 36.7 bits (81), Expect = 0.018
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Frame = +2
Query: 272 VSEFISTLLLLVLGCMACIPHAGYL------PQPPIYGALGFGLVVSFNVQIFGHISGAH 433
+SEFI+TLL + G + + A P + A+ + V I +ISG H
Sbjct: 22 LSEFIATLLFVFAGVGSALAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGH 81
Query: 434 MNPSVTLASLIWGAIS 481
+NP+VTL + G I+
Sbjct: 82 LNPAVTLGLAVGGNIT 97
>At2g36830.1 68415.m04516 major intrinsic family protein / MIP
family protein contains Pfam profile: MIP PF00230
Length = 251
Score = 36.7 bits (81), Expect = 0.018
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Frame = +2
Query: 272 VSEFISTLLLLVLGC---MA---CIPHAGYLPQPPIYGALG--FGLVVSFNVQIFGHISG 427
++EFISTL+ +V G MA + P + A+ FGL V+ V + +ISG
Sbjct: 24 LAEFISTLIFVVAGSGSGMAFNKLTENGATTPSGLVAAAVAHAFGLFVA--VSVGANISG 81
Query: 428 AHMNPSVTLASLIWGAISFPLAIAF 502
H+NP+VT + I G I+ I +
Sbjct: 82 GHVNPAVTFGAFIGGNITLLRGILY 106
>At2g04675.1 68415.m00477 expressed protein
Length = 67
Score = 36.3 bits (80), Expect = 0.023
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 481 RYRAPYQRGQCDGRIHVRSRYMSKYLDIKRDY 386
+YRAPY RG CD HV+S K ++D+
Sbjct: 11 KYRAPYTRGSCDNYKHVKSAVCKKVCQRRKDF 42
>At5g60660.1 68418.m07613 major intrinsic family protein / MIP
family protein similar to mipC protein GI:1657948 from
[Mesembryanthemum crystallinum]
Length = 291
Score = 35.9 bits (79), Expect = 0.031
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 16/106 (15%)
Frame = +2
Query: 239 DVRVVHEW---RQIVSEFISTLLLLVLGCMACIPHAGYLPQPPIY------GALGF-GLV 388
D+ + +W R +++EF++TLL L + + I GY Q G +G G+
Sbjct: 28 DMEELRKWPLYRAVIAEFVATLLFLYVSILTVI---GYKAQTDATAGGVDCGGVGILGIA 84
Query: 389 VSFNVQIF------GHISGAHMNPSVTLASLIWGAISFPLAIAFIV 508
+F IF ISG H+NP+VT+ + +S + +IV
Sbjct: 85 WAFGGMIFVLVYCTAGISGGHINPAVTVGLFLARKVSLVRTVLYIV 130
>At4g01470.1 68417.m00190 major intrinsic family protein / MIP
family protein contains Pfam profile: MIP PF00230
Length = 252
Score = 35.1 bits (77), Expect = 0.054
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +2
Query: 251 VHEWRQIVSEFISTL-LLLVLGCMACIPHAGYLPQPPIYGALGFGLVVSFNVQIFGHISG 427
V W +V E + T L+ + A P G + I L GL+V N+ + G G
Sbjct: 139 VTPWNAVVFEIVMTFGLVYTVYATAVDPKKGDIG---IIAPLAIGLIVGANILVGGAFDG 195
Query: 428 AHMNPSVTLASLI 466
A MNP+V+ +
Sbjct: 196 ASMNPAVSFGPAV 208
Score = 32.3 bits (70), Expect = 0.38
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Frame = +2
Query: 263 RQIVSEFISTLLLLVLGC---MACIPHAGYLPQPP---IYGALGFGLVVSFNVQIFGHIS 424
R +EF S ++ + G MA G P P + +L + V + ++S
Sbjct: 21 RAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATPAGLVAASLSHAFALFVAVSVGANVS 80
Query: 425 GAHMNPSVTLASLIWGAISFPLAIAF 502
G H+NP+VT + I G I+ AI +
Sbjct: 81 GGHVNPAVTFGAFIGGNITLLRAILY 106
>At1g17810.2 68414.m02205 major intrinsic family protein / MIP
family protein contains Pfam profile: MIP PF00230
Length = 225
Score = 35.1 bits (77), Expect = 0.054
Identities = 20/47 (42%), Positives = 27/47 (57%)
Frame = +2
Query: 368 ALGFGLVVSFNVQIFGHISGAHMNPSVTLASLIWGAISFPLAIAFIV 508
AL L + V ++SG H+NP+VT A+LI G IS AI + V
Sbjct: 28 ALAHALALFAAVSAAINVSGGHVNPAVTFAALIGGRISVIRAIYYWV 74
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +2
Query: 251 VHEWRQIVSEFISTLLLL-VLGCMACIPHAGYLPQPPIYGALGFGLVVSFNVQIFGHISG 427
V E ++ E I T L+ V+ A P G + I L GL+V N+ + G G
Sbjct: 105 VSELHGLLMEIILTFALVYVVYSTAIDPKRGSIG---IIAPLAIGLIVGANILVGGPFDG 161
Query: 428 AHMNPS 445
A MNP+
Sbjct: 162 ASMNPA 167
>At1g17810.1 68414.m02204 major intrinsic family protein / MIP
family protein contains Pfam profile: MIP PF00230
Length = 267
Score = 35.1 bits (77), Expect = 0.054
Identities = 20/47 (42%), Positives = 27/47 (57%)
Frame = +2
Query: 368 ALGFGLVVSFNVQIFGHISGAHMNPSVTLASLIWGAISFPLAIAFIV 508
AL L + V ++SG H+NP+VT A+LI G IS AI + V
Sbjct: 70 ALAHALALFAAVSAAINVSGGHVNPAVTFAALIGGRISVIRAIYYWV 116
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +2
Query: 251 VHEWRQIVSEFISTLLLL-VLGCMACIPHAGYLPQPPIYGALGFGLVVSFNVQIFGHISG 427
V E ++ E I T L+ V+ A P G + I L GL+V N+ + G G
Sbjct: 147 VSELHGLLMEIILTFALVYVVYSTAIDPKRGSIG---IIAPLAIGLIVGANILVGGPFDG 203
Query: 428 AHMNPS 445
A MNP+
Sbjct: 204 ASMNPA 209
>At2g37170.1 68415.m04560 plasma membrane intrinsic protein 2B
(PIP2B) / aquaporin PIP2.2 (PIP2.2) identical to
SP|P43287 Plasma membrane intrinsic protein 2B
{Arabidopsis thaliana}
Length = 285
Score = 34.7 bits (76), Expect = 0.071
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Frame = +2
Query: 260 WRQIVSEFISTLLLLVLGCMACIPH-------AGYLPQPPIYGALG----FGLVVSFNVQ 406
+R +++EF++TLL L + + I + AG + + G LG FG ++ V
Sbjct: 36 YRAVIAEFVATLLFLYITVLTVIGYKIQSDTKAGGVDCGGV-GILGIAWAFGGMIFILVY 94
Query: 407 IFGHISGAHMNPSVTLASLIWGAISFPLAIAFIV 508
ISG H+NP+VT + +S A+ ++V
Sbjct: 95 CTAGISGGHINPAVTFGLFLARKVSLIRAVLYMV 128
>At1g01620.1 68414.m00079 plasma membrane intrinsic protein 1C
(PIP1C) / aquaporin PIP1.3 (PIP1.3) / transmembrane
protein B (TMPB) identical to plasma membrane intrinsic
protein 1c SP:Q08733 from [Arabidopsis thaliana]
Length = 286
Score = 34.7 bits (76), Expect = 0.071
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Frame = +2
Query: 260 WRQIVSEFISTLLLLVLGCMACIPHAGYLPQPPIYGALGF-GLVVSFNVQIFG------H 418
+R ++EFI+T L L + + + G P + ++G G+ +F IF
Sbjct: 51 YRAGIAEFIATFLFLYITVLTVM---GVKRAPNMCASVGIQGIAWAFGGMIFALVYCTAG 107
Query: 419 ISGAHMNPSVTLASLIWGAISFPLAIAFIV 508
ISG H+NP+VT + +S A+ +IV
Sbjct: 108 ISGGHINPAVTFGLFLARKLSLTRAVFYIV 137
>At4g23400.1 68417.m03373 major intrinsic family protein / MIP
family protein contains Pfam profile: MIP PF00230
Length = 287
Score = 34.3 bits (75), Expect = 0.094
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Frame = +2
Query: 260 WRQIVSEFISTLLLL---VLGCMACIPHAGYLPQPPIYG-ALGFGLVVSFNVQIFGHISG 427
+R ++EFI+T L L VL M I G A FG ++ V ISG
Sbjct: 52 YRAGIAEFIATFLFLYVTVLTVMGVKRAPNMCASVGIQGIAWAFGGMIFALVYCTAGISG 111
Query: 428 AHMNPSVTLASLIWGAISFPLAIAFIV 508
H+NP+VT + +S A+ +IV
Sbjct: 112 GHINPAVTFGLFLARKLSLTRALFYIV 138
>At2g37180.1 68415.m04561 plasma membrane intrinsic protein 2C
(PIP2C) / aquaporin PIP2.3 (PIP2.3) / water-stress
induced tonoplast intrinsic protein (RD28) identical to
plasma membrane intrinsic protein 2C SP:P30302 from
[Arabidopsis thaliana]
Length = 285
Score = 34.3 bits (75), Expect = 0.094
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Frame = +2
Query: 260 WRQIVSEFISTLLLLVLGCMACIPH-------AGYLPQPPIYGALG----FGLVVSFNVQ 406
+R +++EF++TLL L + + I + AG + + G LG FG ++ V
Sbjct: 36 YRAVIAEFVATLLFLYVTVLTVIGYKIQSDTKAGGVDCGGV-GILGIAWAFGGMIFILVY 94
Query: 407 IFGHISGAHMNPSVTLASLIWGAISFPLAIAFIV 508
ISG H+NP+VT + +S A+ ++V
Sbjct: 95 CTAGISGGHINPAVTFGLFLARKVSLIRAVLYMV 128
>At2g29870.1 68415.m03627 major intrinsic family protein / MIP
family protein contains Pfam profile: MIP PF00230
Length = 139
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +2
Query: 272 VSEFISTLLLLVLGCMACIPHAGYLPQPPIYGALGFGLVVSFNVQIFGHISGAHMNPSVT 451
V EFI T L+++ C + G + G V+ NV G +SGA MNP+ +
Sbjct: 25 VMEFIITGFLMLVVCAVTTTKR---TTEELEGLI-IGATVTLNVIFVGEVSGASMNPARS 80
Query: 452 LA-SLIWG 472
+ +L+WG
Sbjct: 81 IGPALVWG 88
>At4g00430.2 68417.m00060 plasma membrane intrinsic protein,
putative identical to transmembrane protein GI:535780
from [Arabidopsis thaliana]; very strong similarity to
SP|Q08733 Plasma membrane intrinsic protein 1C
(Transmembrane protein B) (TMP-B) {Arabidopsis
thaliana}; contains Pfam profile PF00230: Major
intrinsic protein;
Length = 219
Score = 33.1 bits (72), Expect = 0.22
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Frame = +2
Query: 260 WRQIVSEFISTLLLLVLGCMACIPHAGYLPQPPIYGALGF-GLVVSFNVQIFG------H 418
+R ++EFI+T L L + + + G P + ++G G+ +F IF
Sbjct: 52 YRAGIAEFIATFLFLYITVLTVM---GVKRAPNMCASVGIQGIAWAFGGMIFALVYCTAG 108
Query: 419 ISGAHMNPSVTLASLIWGAISFPLAIAFIV 508
ISG H+NP+VT + +S A+ +++
Sbjct: 109 ISGGHINPAVTFGLFLARKLSLTRAVFYMI 138
>At4g00430.1 68417.m00059 plasma membrane intrinsic protein,
putative identical to transmembrane protein GI:535780
from [Arabidopsis thaliana]; very strong similarity to
SP|Q08733 Plasma membrane intrinsic protein 1C
(Transmembrane protein B) (TMP-B) {Arabidopsis
thaliana}; contains Pfam profile PF00230: Major
intrinsic protein;
Length = 287
Score = 33.1 bits (72), Expect = 0.22
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Frame = +2
Query: 260 WRQIVSEFISTLLLLVLGCMACIPHAGYLPQPPIYGALGF-GLVVSFNVQIFG------H 418
+R ++EFI+T L L + + + G P + ++G G+ +F IF
Sbjct: 52 YRAGIAEFIATFLFLYITVLTVM---GVKRAPNMCASVGIQGIAWAFGGMIFALVYCTAG 108
Query: 419 ISGAHMNPSVTLASLIWGAISFPLAIAFIV 508
ISG H+NP+VT + +S A+ +++
Sbjct: 109 ISGGHINPAVTFGLFLARKLSLTRAVFYMI 138
>At1g73190.1 68414.m08470 tonoplast intrinsic protein, alpha /
alpha-TIP (TIP3.1) identical to SP|P26587 Tonoplast
intrinsic protein, alpha (Alpha TIP) [Arabidopsis
thaliana] (Plant Physiol. 99, 561-570 (1992))
Length = 268
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 332 HAGY-LPQPPIYGALGFGLVVSFNVQIFGHISGAHMNPSVTLASLIWGAISFPLAIAF 502
HAG P I AL + V ++SG H+NP+VT +L+ G ++ AI +
Sbjct: 57 HAGTNTPGGLILVALAHAFALFAAVSAAINVSGGHVNPAVTFGALVGGRVTAIRAIYY 114
Score = 30.3 bits (65), Expect = 1.5
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +2
Query: 212 RLASIRMQSDVRVVHEWRQIVSEFISTL-LLLVLGCMACIPHAGYLPQPPIYGALGFGLV 388
R R+ S V V+ +V E I T L+ V+ P G L I L GL+
Sbjct: 137 RPVGFRLASGVGAVNG---LVLEIILTFGLVYVVYSTLIDPKRGSLG---IIAPLAIGLI 190
Query: 389 VSFNVQIFGHISGAHMNPS 445
V N+ + G SGA MNP+
Sbjct: 191 VGANILVGGPFSGASMNPA 209
>At3g58130.1 68416.m06482 N-acetylglucosaminyl-phosphatidylinositol
de-N-acetylase-related similar to SP|Q9Y2B2
N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
(EC 3.5.1.-) (Phosphatidylinositol-glycan biosynthesis,
class L protein) (PIG-L) {Homo sapiens}
Length = 257
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +3
Query: 579 LYDVTTYGNYIVSSFNRRSSFDCGSFIFELRLLGSRQQEQTGLRSG*VWFGYCGIIDSWR 758
++ + T+ NY VS G F L+ R + L S ++ YCG +D W
Sbjct: 142 IHTIITFDNYGVSGHCNHRDVHRGVLKF-LQTNSGRNVKAWELVSLNIFRKYCGPVDIWL 200
Query: 759 AITGASMNPA 788
+I A ++P+
Sbjct: 201 SILSAKIHPS 210
>At2g24010.1 68415.m02868 serine carboxypeptidase S10 family protein
similar to Serine carboxypeptidase II chains A and B
(SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)];
Length = 425
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = +3
Query: 237 AMYAW--CMSGDKSYRSLFPRCCFS 305
AMYAW M DK+Y+S+ C F+
Sbjct: 197 AMYAWSHAMISDKTYKSILKHCSFT 221
>At1g55240.1 68414.m06309 expressed protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 311
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +3
Query: 282 LFPRCCFSCLGAWHVYRTLDIYLNHQYTEH*GSVW*SRLMSKYLDIYL 425
+ P F LG WH++ + ++ H T S W ++L++YL
Sbjct: 8 VLPGFAFVALGLWHLFNNIKLFCLHPNTFS-SSTWFPISKLRHLELYL 54
>At3g51870.1 68416.m05688 mitochondrial substrate carrier family
protein peroxisomal Ca-dependent solute carrier -
Oryctolagus cuniculus, EMBL:AF004161
Length = 381
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +1
Query: 523 AILGYGLLIAVSHIDMDGVCMTLPRTEITLFQALIVEAVLTAALSFLNCACWDPVNKNKQ 702
+++G IAV+ D V +LP Q+ ++ AVL+A ++ L C D V + Q
Sbjct: 247 SLVGIAPYIAVNFCIFDLVKKSLPEEYRKKAQSSLLTAVLSAGIATLTCYPLDTVRRQMQ 306
>At4g38530.1 68417.m05454 phosphoinositide-specific phospholipase C
nearly identical to phosphoinositide-specific
phospholipase C GI:557880 from [Arabidopsis thaliana];
contains Pfam profile: PF00388
phosphatidylinositol-specific phospholipase C
Length = 526
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 163 LTPNRSSK*SKIKYGQTSRKHQDAERC 243
L PN S +++++G+T H+D ++C
Sbjct: 116 LWPNPSGNAAEVRHGRTLTSHEDLQKC 142
>At1g80630.1 68414.m09462 leucine-rich repeat family protein
Length = 578
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +3
Query: 171 QSVIEVIENKVRSDVSQASGCRA---MYAWCMSGDKSYRSLFPRCCFS 305
+ V EV+++ +R C A MY W + + S R + P C FS
Sbjct: 488 RGVKEVVQSCIRLREINLKYCEADKKMYTWMVFANPSLRKIVPPCGFS 535
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,243,638
Number of Sequences: 28952
Number of extensions: 368976
Number of successful extensions: 1076
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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