Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0503
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   6e-05
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)             31   0.83 
SB_45755| Best HMM Match : GPW_gp25 (HMM E-Value=0.47)                 28   5.8  
SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)                 28   5.8  
SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.7  
SB_28525| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34)              28   7.7  

>SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +2

Query: 269 MIPHKTERGKNALRRLRTYDGCPPPFD 349
           MIPHKT++G  A+ R++ +DG PPP+D
Sbjct: 1   MIPHKTKKGTEAMNRMKVFDGVPPPYD 27


>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
          Length = 1459

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 37  SMAVVICWAVWRQSSPRSFSKGTKLLWFAANKSTSLATSLG 159
           SM+V +C ++W  + P  F    +L+W+  N   S++ SLG
Sbjct: 265 SMSVSLCQSIWYHTHPSVFVSLGQLIWY--NTHPSVSVSLG 303


>SB_45755| Best HMM Match : GPW_gp25 (HMM E-Value=0.47)
          Length = 624

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = +2

Query: 401 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKELPMKRNLRGSP 544
           PG+  C VG+L +   W +  + R L  +    A    P  +    +P
Sbjct: 535 PGKQLCLVGQLGYRGRWSFSVIDRPLHTRELAAAFTRTPAAKQRANNP 582


>SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)
          Length = 621

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -3

Query: 253 HRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEMLICSQRTTT 110
           H +   AL+W+G R  FTL +   + + LS  + K  + + C   ++T
Sbjct: 530 HEVWYQALRWRGERVYFTLIMPWMSRVPLSQPIPKRSDRVSCGALSST 577


>SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 12/57 (21%)
 Frame = +3

Query: 33  VIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFRNKL 167
           +IDGR  + GRLA  I ++L              G+ VVV+  + I +SG  + NKL
Sbjct: 20  LIDGRDQICGRLAGYIGQILQGKTKPIYHHAEDVGDYVVVINTKHIVLSGTKWDNKL 76


>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2982

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -2

Query: 275  GSCLLQSP*NLRWSSKMERSTSRIHVAPL 189
            GS + Q+P  L W++++ RST  ++++PL
Sbjct: 1713 GSLMEQNP-ALEWNTQLWRSTQEVYISPL 1740


>SB_28525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -2

Query: 275 GSCLLQSP*NLRWSSKMERSTSRIHVAPL 189
           GS + Q+P  L W++++ RST  ++++PL
Sbjct: 385 GSLMEQNP-ALEWNTQLWRSTQEVYISPL 412


>SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34)
          Length = 225

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -3

Query: 214 RAGFTLHLLRRNDISLSLFLKKLPEMLICSQRTTTTL 104
           R G+   + + ++ ++ LFL   PE++    R TT +
Sbjct: 131 RGGYNCSVCKTSEAAMELFLNNQPEVIFIDMRDTTPI 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,697,458
Number of Sequences: 59808
Number of extensions: 464209
Number of successful extensions: 2027
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2024
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)