Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0502
         (602 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    25   0.37 
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   8.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.0  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   8.0  

>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 507 ILQETILS*SDQFINLLIHLRKVFNNKNLLST 602
           +L E      +QF++L+  LR  F  +NLL T
Sbjct: 185 VLDENAAEHREQFVSLVRELRGAFKAENLLVT 216


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -1

Query: 158 VVWPHW*QPTRLTRRPKLYSSAKKNKM 78
           ++WP W   TR + RP    S +  ++
Sbjct: 188 MLWPAWVYCTRYSDRPSSGRSPRTRRV 214


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 350 PGSCLAGSVRTTSRSDSNQ 406
           PG C A  V  TS  +SN+
Sbjct: 725 PGECCAICVNATSLVESNR 743


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 246 LAGWYT*DLYKSLSPV 199
           ++G Y  D YK LSP+
Sbjct: 47  ISGVYRTDFYKKLSPM 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,578
Number of Sequences: 336
Number of extensions: 2748
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)