BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= mg--0502 (602 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual 28 1.2 SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 27 2.1 SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|... 26 4.9 SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.4 SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy... 25 8.5 SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.5 SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 25 8.5 >SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual Length = 413 Score = 27.9 bits (59), Expect = 1.2 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = +1 Query: 247 AEYIQYQDIVYRGNATTRITAIQATEVGATQYAS 348 + ++Q+QDIVYR N + QA Q+ S Sbjct: 78 SHHVQFQDIVYRSNTSASEIHFQAENAPLVQWYS 111 >SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 652 Score = 27.1 bits (57), Expect = 2.1 Identities = 11/45 (24%), Positives = 24/45 (53%) Frame = +1 Query: 250 EYIQYQDIVYRGNATTRITAIQATEVGATQYASAWILSGGLSQNN 384 EY+ YQ I++R + + V + + ++I + GL+++N Sbjct: 256 EYLHYQGIIHRDIKPANLLLNSSNCVKISDFGVSYIANAGLNEDN 300 >SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr 2|||Manual Length = 329 Score = 25.8 bits (54), Expect = 4.9 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +1 Query: 304 TAIQATEVGATQYASAWILSGGLSQNNVTVRFQS 405 TA+ +T +G + + I SG L +NNV +F S Sbjct: 33 TAVNSTTLGLAEKVNFAITSGLLDRNNVWRQFTS 66 >SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 700 Score = 25.4 bits (53), Expect = 6.4 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +2 Query: 284 VTQRRALRLYRPRKLGQLSTHQPGSCLAGSVRTTSRSDSNQL 409 V Q R + L R L + ++ PGSCL G+ T+ + QL Sbjct: 402 VAQLRDIVL-RSETLAENPSNMPGSCLPGASSNTADEFTEQL 442 >SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces pombe|chr 2|||Manual Length = 482 Score = 25.0 bits (52), Expect = 8.5 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -2 Query: 295 SLRYRDTLCLGIEYIRPSWLVYVG 224 SLRY+D LG + +P+ L VG Sbjct: 143 SLRYKDIPTLGFTHYQPAQLTTVG 166 >SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 628 Score = 25.0 bits (52), Expect = 8.5 Identities = 10/37 (27%), Positives = 19/37 (51%) Frame = +1 Query: 415 YGYYYLFDVWGR*FFDNSSFIKLSKYCT*HSFYKKRF 525 YGY ++F +WG F F+ C H+ + +++ Sbjct: 325 YGYQWMFLIWGVVAFTQGLFLPRWLPCIKHNQHNEKW 361 >SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces pombe|chr 1|||Manual Length = 568 Score = 25.0 bits (52), Expect = 8.5 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = +1 Query: 340 YASAWILSGGLSQNNVTV-RFQSARG-YGYYYLFDVWG 447 Y +A I + +S + + ARG YGY ++F +WG Sbjct: 226 YTAAQIAAAAVSLVSAGFQKMDGARGLYGYQWMFLIWG 263 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,290,375 Number of Sequences: 5004 Number of extensions: 43978 Number of successful extensions: 91 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 90 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 91 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 264253462 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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