Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0502
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         28   1.2  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    27   2.1  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    26   4.9  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.4  
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy...    25   8.5  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.5  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    25   8.5  

>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 247 AEYIQYQDIVYRGNATTRITAIQATEVGATQYAS 348
           + ++Q+QDIVYR N +      QA      Q+ S
Sbjct: 78  SHHVQFQDIVYRSNTSASEIHFQAENAPLVQWYS 111


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +1

Query: 250 EYIQYQDIVYRGNATTRITAIQATEVGATQYASAWILSGGLSQNN 384
           EY+ YQ I++R      +    +  V  + +  ++I + GL+++N
Sbjct: 256 EYLHYQGIIHRDIKPANLLLNSSNCVKISDFGVSYIANAGLNEDN 300


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 304 TAIQATEVGATQYASAWILSGGLSQNNVTVRFQS 405
           TA+ +T +G  +  +  I SG L +NNV  +F S
Sbjct: 33  TAVNSTTLGLAEKVNFAITSGLLDRNNVWRQFTS 66


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 284 VTQRRALRLYRPRKLGQLSTHQPGSCLAGSVRTTSRSDSNQL 409
           V Q R + L R   L +  ++ PGSCL G+   T+   + QL
Sbjct: 402 VAQLRDIVL-RSETLAENPSNMPGSCLPGASSNTADEFTEQL 442


>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 482

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 295 SLRYRDTLCLGIEYIRPSWLVYVG 224
           SLRY+D   LG  + +P+ L  VG
Sbjct: 143 SLRYKDIPTLGFTHYQPAQLTTVG 166


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 415 YGYYYLFDVWGR*FFDNSSFIKLSKYCT*HSFYKKRF 525
           YGY ++F +WG   F    F+     C  H+ + +++
Sbjct: 325 YGYQWMFLIWGVVAFTQGLFLPRWLPCIKHNQHNEKW 361


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +1

Query: 340 YASAWILSGGLSQNNVTV-RFQSARG-YGYYYLFDVWG 447
           Y +A I +  +S  +    +   ARG YGY ++F +WG
Sbjct: 226 YTAAQIAAAAVSLVSAGFQKMDGARGLYGYQWMFLIWG 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,375
Number of Sequences: 5004
Number of extensions: 43978
Number of successful extensions: 91
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)