Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0502
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0027 + 27775552-27775770,27776437-27778483,27778589-27778965     29   2.8  
11_08_0012 + 27623055-27623277,27623291-27625165,27625456-276255...    29   2.8  
07_03_1701 + 28823709-28824058,28824432-28824638,28825565-28825742     29   3.7  
01_03_0099 + 12547235-12547510                                         28   6.5  

>11_08_0027 + 27775552-27775770,27776437-27778483,27778589-27778965
          Length = 880

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = +2

Query: 317 PRKLGQLSTHQ----PGSCLAGSVRTTSRSDSNQLEDTDIITSSTYGDANFLITL 469
           P  LG LS+       G+ L GS+ +T  S  N L   D+  ++ +GD NFL T+
Sbjct: 172 PASLGNLSSLAILLLKGNLLDGSLLSTVDS-MNSLTAVDVTKNNLHGDLNFLSTV 225


>11_08_0012 +
           27623055-27623277,27623291-27625165,27625456-27625567,
           27625586-27626130,27626305-27626591,27626770-27626805
          Length = 1025

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = +2

Query: 317 PRKLGQLSTHQ----PGSCLAGSVRTTSRSDSNQLEDTDIITSSTYGDANFLITL 469
           P  LG LS+       G+ L GS+ +T  S  N L   D+  ++ +GD NFL T+
Sbjct: 382 PASLGNLSSLAILLLKGNLLDGSLPSTVDS-MNSLTAVDVTENNLHGDLNFLSTV 435


>07_03_1701 + 28823709-28824058,28824432-28824638,28825565-28825742
          Length = 244

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 116 FALVVLAATNAAILPSSTRANLIVGYVSTGDRLLYRSYVYQPARPNIFNT 265
           F + +L+  +   L SST ANL     +  DRL+ RS  Y+     +F +
Sbjct: 151 FRVFILSGRDQQTLASSTAANLAAAGFAGYDRLIMRSAEYRGMSAVVFKS 200


>01_03_0099 + 12547235-12547510
          Length = 91

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +2

Query: 122 LVVLAATNAAILPSSTRANLIVGYVST 202
           L++LAA  A  LP+++RA L VG+ +T
Sbjct: 11  LMLLAAALACSLPAASRAQLQVGFYNT 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,214,613
Number of Sequences: 37544
Number of extensions: 267537
Number of successful extensions: 516
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)