Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0502
         (602 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21610.1 68415.m02570 pectinesterase family protein contains ...    30   1.0  
At5g47480.1 68418.m05863 expressed protein                             27   9.6  

>At2g21610.1 68415.m02570 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 352

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 318 GLYSRNARRCVTAIHYVLVLNIFGLAGWYT*DLYKSLSP 202
           GLY   ++R +   H+++++NIF L+   +  +  S SP
Sbjct: 2   GLYKTKSKRSIANYHHIIIINIFILSSITSSSMASSSSP 40


>At5g47480.1 68418.m05863 expressed protein
          Length = 1350

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 329 GQLSTHQPGSCLAGSVRTTSRSDSNQLEDTDIITS 433
           G +   +P S +A        SD+N+L D D++ S
Sbjct: 84  GSVGKEEPSSSIAPEAVQFVNSDANRLRDVDVVRS 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,607,206
Number of Sequences: 28952
Number of extensions: 218266
Number of successful extensions: 418
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)