Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0500
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...   138   4e-34
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...   138   4e-34
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    38   0.001
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    29   0.44 
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    27   2.3  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    26   4.1  
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    26   4.1  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   7.1  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   7.1  
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...    25   7.1  

>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score =  138 bits (335), Expect = 4e-34
 Identities = 67/79 (84%), Positives = 75/79 (94%)
 Frame = +3

Query: 255 TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSS 434
           TRIG AGTVRRQAVDVSPLRRVNQA+ L+  GAREAAFRN+K+I+EC+A+E+INAAKGSS
Sbjct: 125 TRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSS 184

Query: 435 NSYAIKKKDELERVAKSNR 491
           NSYAIKKKDELERVAKSNR
Sbjct: 185 NSYAIKKKDELERVAKSNR 203



 Score =  126 bits (305), Expect = 2e-30
 Identities = 69/96 (71%), Positives = 77/96 (80%), Gaps = 5/96 (5%)
 Frame = +1

Query: 25  LPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENP 204
           LPH+AGR+  KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NP
Sbjct: 48  LPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNP 107

Query: 205 LQVLVTAIINSGPREDS--LGS--VVRVQFV-VKPL 297
           LQVLV A+   GPREDS  +GS   VR Q V V PL
Sbjct: 108 LQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPL 143


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score =  138 bits (335), Expect = 4e-34
 Identities = 67/79 (84%), Positives = 75/79 (94%)
 Frame = +3

Query: 255 TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSS 434
           TRIG AGTVRRQAVDVSPLRRVNQA+ L+  GAREAAFRN+K+I+EC+A+E+INAAKGSS
Sbjct: 125 TRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSS 184

Query: 435 NSYAIKKKDELERVAKSNR 491
           NSYAIKKKDELERVAKSNR
Sbjct: 185 NSYAIKKKDELERVAKSNR 203



 Score =  126 bits (305), Expect = 2e-30
 Identities = 69/96 (71%), Positives = 77/96 (80%), Gaps = 5/96 (5%)
 Frame = +1

Query: 25  LPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENP 204
           LPH+AGR+  KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NP
Sbjct: 48  LPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNP 107

Query: 205 LQVLVTAIINSGPREDS--LGS--VVRVQFV-VKPL 297
           LQVLV A+   GPREDS  +GS   VR Q V V PL
Sbjct: 108 LQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPL 143


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 23/53 (43%), Positives = 28/53 (52%)
 Frame = +1

Query: 85  VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP 243
           V+ L N +M     +GKK  A +IV  A  II   TGENP+ VL  AI    P
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISP 174


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 144 GRTYCQTCV*NYSLVNWRKPSASTRDCHYQLWT 242
           G TYC  C     L+NW K S S   C  +L+T
Sbjct: 101 GHTYCYEC-----LLNWLKESKSCPTCRQKLYT 128


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 418 QLRVHLTPTPSKRRTSWSVLLNPTV 492
           Q ++H  P P +RR S + L NP++
Sbjct: 124 QQKIHRNPQPRRRRRSTTALPNPSL 148


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 93  PYKLSNDARSEQWQKTDGRTYCQTCV*NYSLVNWRKPSAST 215
           PYK+   +  + W +  G+TY  + +  + L   R+ +AST
Sbjct: 138 PYKIVEHSNGDAWLEARGKTYSPSQIGGFILSKMRE-TAST 177


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 19/80 (23%), Positives = 35/80 (43%)
 Frame = +1

Query: 91  RLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSLGSVV 270
           R  NS   HG      L+ V ++   +++   L+    L + VTA++N      SL  ++
Sbjct: 237 RELNSRFFHGLTLVPSLILVLLLSLGYQVGSFLSHLLSLTIAVTALVNGFSIAKSLALML 296

Query: 271 RVQFVVKPLMFHPCAESTKQ 330
            + +  K  +F  C    K+
Sbjct: 297 LLTYSNKEKVFE-CVSLIKE 315


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 43  RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIH 183
           +Y  KR   A+  +V R       H R N  KL +  +  H F ++H
Sbjct: 390 KYPRKRQEIAE--LVIRCLQDRSSHVRRNAIKLFSKLLTTHPFSVMH 434


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 405 ELINAAKGSSNSYAIKKKDELER 473
           E +N+   + NS  ++KKDELE+
Sbjct: 133 EKLNSEISNQNSLILQKKDELEK 155


>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 342 TKARLLG*LGARVKHQRLDDELYPHDRS**IFTGSRVDN 226
           T+A +LG   A VK +   DE+ PH      F G+R  N
Sbjct: 438 TEALMLGKTPAEVKAEGTPDEIVPHK----TFVGNRPSN 472


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,242,101
Number of Sequences: 5004
Number of extensions: 43866
Number of successful extensions: 97
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)