Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0500
(533 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 152 2e-37
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 151 3e-37
01_07_0219 + 42079095-42079399,42079584-42079728,42081695-420817... 31 0.44
07_03_0100 + 13389899-13390219,13390723-13390841,13391220-133913... 28 4.1
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 27 7.2
04_04_1155 - 31308704-31309051,31309301-31309451,31309532-313097... 27 7.2
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 152 bits (368), Expect = 2e-37
Identities = 75/101 (74%), Positives = 83/101 (82%), Gaps = 5/101 (4%)
Frame = +1
Query: 10 KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLL 189
K+A YLPH+AGRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKK+MAVRIVKHA EIIHLL
Sbjct: 39 KHATYLPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLL 98
Query: 190 TGENPLQVLVTAIINSGPRED-----SLGSVVRVQFVVKPL 297
T NP+QV+V AIINSGPRED S G+V R + PL
Sbjct: 99 TDANPIQVIVDAIINSGPREDATRIGSAGAVRRQAVDISPL 139
Score = 144 bits (350), Expect = 3e-35
Identities = 70/79 (88%), Positives = 76/79 (96%)
Frame = +3
Query: 255 TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSS 434
TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAEC+ADELINAAKGSS
Sbjct: 121 TRIGSAGAVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSS 180
Query: 435 NSYAIKKKDELERVAKSNR 491
NSYAIKKKDE+ERVAK+NR
Sbjct: 181 NSYAIKKKDEIERVAKANR 199
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 151 bits (366), Expect = 3e-37
Identities = 74/101 (73%), Positives = 83/101 (82%), Gaps = 5/101 (4%)
Frame = +1
Query: 10 KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLL 189
K+A YLPH+AGRY+ KRFRKAQCP+VERLTNSLMMHGRNNGKK+MAVRIVKHA EIIHLL
Sbjct: 40 KHATYLPHTAGRYSAKRFRKAQCPLVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLL 99
Query: 190 TGENPLQVLVTAIINSGPRED-----SLGSVVRVQFVVKPL 297
T NP+QV+V AIINSGPRED S G+V R + PL
Sbjct: 100 TDANPIQVIVDAIINSGPREDATRIGSAGAVRRQAVDISPL 140
Score = 144 bits (350), Expect = 3e-35
Identities = 70/79 (88%), Positives = 76/79 (96%)
Frame = +3
Query: 255 TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSS 434
TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAEC+ADELINAAKGSS
Sbjct: 122 TRIGSAGAVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSS 181
Query: 435 NSYAIKKKDELERVAKSNR 491
NSYAIKKKDE+ERVAK+NR
Sbjct: 182 NSYAIKKKDEIERVAKANR 200
>01_07_0219 +
42079095-42079399,42079584-42079728,42081695-42081739,
42082150-42082265,42082913-42083012,42083103-42083138,
42083301-42083351,42083431-42083565
Length = 310
Score = 31.5 bits (68), Expect = 0.44
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 282 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNS 440
RR+AV + +RR+ A WL GAR A R A E++ +A G S
Sbjct: 9 RREAVRAAHVRRIEAAAWL---GARRATRREDAAARCAAAGEVVGSAAGVGRS 58
>07_03_0100 +
13389899-13390219,13390723-13390841,13391220-13391315,
13391481-13391553,13392055-13392123
Length = 225
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 370 LNAASRAPVHKSQIAWLTRRKGETSTA*RRTVPARP 263
L+A+SR P + +I RR+G + + RR+ P +P
Sbjct: 49 LHASSRVPAARHRIVCPCRRRGGSPSLTRRSSPEKP 84
>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 85 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTG 195
+ L ++HG N ++++AV +K +I+HLL G
Sbjct: 1328 ISALVVGSVIHGVVNIERMVAVLKIKDGLDILHLLRG 1364
>04_04_1155 -
31308704-31309051,31309301-31309451,31309532-31309763,
31309854-31310064,31310304-31310422,31310507-31310581,
31310789-31310990,31311075-31311454,31311569-31311633,
31311735-31311779,31312166-31312231,31312667-31312741,
31313022-31313093,31313659-31313727,31313813-31313884,
31313995-31314066,31314441-31314512,31314597-31314668,
31315091-31315162,31315279-31315474,31316094-31316202
Length = 924
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -2
Query: 148 RPSVFCHCSDRASLESL*GAPRLGTGLYGNACVHTCQLNEVNIL 17
RP+VF + R++ E+ + RLG G YG V+ +LN+ ++
Sbjct: 579 RPNVFSYSELRSATENFSSSNRLGEGGYG--AVYKGKLNDGRVV 620
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,416,932
Number of Sequences: 37544
Number of extensions: 284332
Number of successful extensions: 680
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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