Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0500
         (533 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)               165   2e-41
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)               31   0.59 
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    29   2.4  
SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)           28   4.2  
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)                      28   5.5  
SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   7.3  
SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)              27   7.3  

>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
          Length = 272

 Score =  165 bits (402), Expect = 2e-41
 Identities = 81/104 (77%), Positives = 88/104 (84%), Gaps = 5/104 (4%)
 Frame = +1

Query: 1   VKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEII 180
           VKEKY+ YLPH+AGRYA KRFRKAQCPIVER+TNS+MMHGRNNGKKLM VRI+KH+FEII
Sbjct: 109 VKEKYSTYLPHTAGRYAAKRFRKAQCPIVERITNSMMMHGRNNGKKLMTVRIIKHSFEII 168

Query: 181 HLLTGENPLQVLVTAIINSGPREDS-----LGSVVRVQFVVKPL 297
           HLLTGENPLQVLV AIINSGPREDS      G+V R    V PL
Sbjct: 169 HLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPL 212



 Score =  157 bits (382), Expect = 4e-39
 Identities = 76/79 (96%), Positives = 79/79 (100%)
 Frame = +3

Query: 255 TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSS 434
           TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGARE+AFRNIK+IAEC+ADELINAAKGSS
Sbjct: 194 TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGARESAFRNIKSIAECLADELINAAKGSS 253

Query: 435 NSYAIKKKDELERVAKSNR 491
           NSYAIKKKDELERVAKSNR
Sbjct: 254 NSYAIKKKDELERVAKSNR 272


>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
          Length = 762

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +3

Query: 381 TIAECVADELINAAKGSSNSY--AIKKKDELERVAK 482
           T  +C+ DEL +  +G  NSY   +K+K+ELER  K
Sbjct: 422 TEVQCLRDELKDNEQGMDNSYQAILKEKEELERSHK 457


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 419  CIN*FICNTLCDCFNISECSLTCTC 345
            C+N  +C+    C  +   SLTCTC
Sbjct: 2164 CVNETVCDGNATCARVKGTSLTCTC 2188


>SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)
          Length = 328

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -1

Query: 401 CNTLCDCFNISECSLTCTCAQKPDCLVDSA 312
           C   C C   + C   CTC Q   C+V SA
Sbjct: 226 CCVTCRCSVCTCCPCDCTCLQCAPCIVFSA 255


>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 2411

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
 Frame = -1

Query: 401 CNTLCDCFNISECSLTCTCAQKPDC--LVDSAQG*NINGLTTNCTRTTDPSESSRGPELI 228
           C     C + ++ +LTCTC ++ +C    D   G + N   T C         SR  ++ 
Sbjct: 271 CEHRAKCISNTDGTLTCTCRKEENCPGRADYVCGSDGNSYFTECHMDATACRESR--DIT 328

Query: 227 MAVTSTCRGFSP 192
           +     C   SP
Sbjct: 329 VKHKGPCGSCSP 340


>SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1239

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
 Frame = +1

Query: 61   FRKAQCPIVERLTNSLMMHGRNNGKKLMAV----RIVKHAFEIIH---LLTGENPLQVLV 219
            F+  +CP+     + L +H R +  K+       +  +H+  +     L +G+ P +   
Sbjct: 1113 FKCPKCPMTFPRRSRLAVHVRTHSDKVFQCDQCGKSFRHSRSLARHELLHSGQRPYRCTE 1172

Query: 220  TAIINSGPREDSLGSVVRVQFVVKPLMFHPCAESTKQSGFCAQVHVR-LHSE 372
                 S  R+D L   +R     +P     C+++ +QSG   + HVR  H E
Sbjct: 1173 PECEQSFGRQDHLTDHLRTHTGERPFQCPHCSKTFRQSGVMNR-HVRSAHEE 1223


>SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)
          Length = 359

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 428 TLSCIN*FICNTLCDCFNISECSLTCTCAQKPDC 327
           T  C +   C +  +C + SEC  T  CA   +C
Sbjct: 94  TRECESTSECESTTECESTSECESTSECASTTEC 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,096,669
Number of Sequences: 59808
Number of extensions: 354035
Number of successful extensions: 932
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)