Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0500
         (533 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila...   147   4e-36
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila...   147   4e-36
At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi...   147   4e-36
At4g39450.1 68417.m05582 expressed protein                             29   2.6  
At1g20060.1 68414.m02511 kinesin motor protein-related                 29   2.6  
At1g59590.1 68414.m06702 expressed protein                             28   4.5  
At5g18410.1 68418.m02166 expressed protein similar to p53 induci...    27   7.9  
At4g34830.1 68417.m04942 pentatricopeptide (PPR) repeat-containi...    27   7.9  
At1g79400.1 68414.m09253 cation/proton exchanger, putative (CHX2...    27   7.9  

>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  147 bits (357), Expect = 4e-36
 Identities = 74/101 (73%), Positives = 87/101 (86%), Gaps = 5/101 (4%)
 Frame = +1

Query: 10  KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLL 189
           K+A ++PH+AGRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL
Sbjct: 47  KHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL 106

Query: 190 TGENPLQVLVTAIINSGPREDS--LGS--VVRVQFV-VKPL 297
           +  NP+QV++ AI+NSGPRED+  +GS  VVR Q V + PL
Sbjct: 107 SDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPL 147



 Score =  144 bits (350), Expect = 2e-35
 Identities = 70/79 (88%), Positives = 76/79 (96%)
 Frame = +3

Query: 255 TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSS 434
           TRIG AG VRRQAVD+SPLRRVNQAI+L+ TGAREAAFRNIKTIAEC+ADELINAAKGSS
Sbjct: 129 TRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSS 188

Query: 435 NSYAIKKKDELERVAKSNR 491
           NSYAIKKKDE+ERVAK+NR
Sbjct: 189 NSYAIKKKDEIERVAKANR 207


>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  147 bits (357), Expect = 4e-36
 Identities = 74/101 (73%), Positives = 87/101 (86%), Gaps = 5/101 (4%)
 Frame = +1

Query: 10  KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLL 189
           K+A ++PH+AGRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL
Sbjct: 47  KHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL 106

Query: 190 TGENPLQVLVTAIINSGPREDS--LGS--VVRVQFV-VKPL 297
           +  NP+QV++ AI+NSGPRED+  +GS  VVR Q V + PL
Sbjct: 107 SDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPL 147



 Score =  144 bits (350), Expect = 2e-35
 Identities = 70/79 (88%), Positives = 76/79 (96%)
 Frame = +3

Query: 255 TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSS 434
           TRIG AG VRRQAVD+SPLRRVNQAI+L+ TGAREAAFRNIKTIAEC+ADELINAAKGSS
Sbjct: 129 TRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSS 188

Query: 435 NSYAIKKKDELERVAKSNR 491
           NSYAIKKKDE+ERVAK+NR
Sbjct: 189 NSYAIKKKDEIERVAKANR 207


>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
           to GP:3043428
          Length = 207

 Score =  147 bits (357), Expect = 4e-36
 Identities = 74/101 (73%), Positives = 87/101 (86%), Gaps = 5/101 (4%)
 Frame = +1

Query: 10  KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLL 189
           K+A ++PH+AGRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL
Sbjct: 47  KHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL 106

Query: 190 TGENPLQVLVTAIINSGPREDS--LGS--VVRVQFV-VKPL 297
           +  NP+QV++ AI+NSGPRED+  +GS  VVR Q V + PL
Sbjct: 107 SDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPL 147



 Score =  145 bits (352), Expect = 1e-35
 Identities = 71/79 (89%), Positives = 76/79 (96%)
 Frame = +3

Query: 255 TRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSS 434
           TRIG AG VRRQAVD+SPLRRVNQAI+LL TGAREAAFRNIKTIAEC+ADELINAAKGSS
Sbjct: 129 TRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSS 188

Query: 435 NSYAIKKKDELERVAKSNR 491
           NSYAIKKKDE+ERVAK+NR
Sbjct: 189 NSYAIKKKDEIERVAKANR 207


>At4g39450.1 68417.m05582 expressed protein
          Length = 1553

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 21/48 (43%), Positives = 26/48 (54%)
 Frame = +3

Query: 297 DVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNS 440
           DVSPL  +   IWL  T ARE +   +  I   +A E I AA  S+NS
Sbjct: 411 DVSPLSCLT--IWLEITAARETSSIKVNDITTKIA-ENIGAAVVSTNS 455


>At1g20060.1 68414.m02511 kinesin motor protein-related
          Length = 951

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 275 TRTTDPSESSRGPELIMAVTSTCRGFSPVNK*IISNACLTI 153
           T TT+ +  S   + I+ + ++C GFS   K   S+A LTI
Sbjct: 306 TATTNSNSQSSRSQCIINIRASCNGFSNETKLQSSDAMLTI 346


>At1g59590.1 68414.m06702 expressed protein
          Length = 211

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 423 KGSSNSYAIKKKDELERVAKSNR 491
           +GSS SYA+KKKD   +++  NR
Sbjct: 174 RGSSPSYAMKKKDFARKLSIENR 196


>At5g18410.1 68418.m02166 expressed protein similar to p53 inducible
           protein [Homo sapiens] GI:5616320
          Length = 1234

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 277 QFVVKPLMFHPCAESTKQSGFCAQVHVRLHSEILKQSQSVLQMN 408
           +F ++P+ F    + TK    CA V +    +ILK S  +L  +
Sbjct: 733 KFSIQPVRFTALFKMTKVKDLCAVVELEKLIDILKHSHELLSQD 776


>At4g34830.1 68417.m04942 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 749

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 31  HSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNG 132
           HS+ + +     KA  P V   TNSL +  +NNG
Sbjct: 291 HSSAKSSRLPSLKAVSPAVTSATNSLFLDHKNNG 324


>At1g79400.1 68414.m09253 cation/proton exchanger, putative (CHX2)
           monovalent cation:proton antiporter family 2 (CPA2)
           member, PMID:11500563
          Length = 783

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -1

Query: 239 PELIMAVTSTCRGFSPVNK*IISNACLTIRTAISFLPLFRPC 114
           P+L++ +      F+P+N   I  AC+ + + + +L L +PC
Sbjct: 3   PKLLLCLPQGDELFNPLNTMFIQMACILVFSQLFYL-LLKPC 43


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,639,394
Number of Sequences: 28952
Number of extensions: 229369
Number of successful extensions: 542
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)