Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0498
         (571 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0MTA5 Cluster: HMG176; n=1; Helicoverpa armigera|Rep: ...    43   0.006
UniRef50_Q4V4H7 Cluster: IP04046p; n=4; Sophophora|Rep: IP04046p...    36   0.88 
UniRef50_A5K036 Cluster: Putative uncharacterized protein; n=1; ...    33   6.2  

>UniRef50_Q0MTA5 Cluster: HMG176; n=1; Helicoverpa armigera|Rep:
           HMG176 - Helicoverpa armigera (Cotton bollworm)
           (Heliothis armigera)
          Length = 176

 Score = 42.7 bits (96), Expect = 0.006
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +1

Query: 256 GASQSGSIRLTHGGLGSTFAAFDITNAAGRGLNYRVEIWGR 378
           G+ Q  + R+  G LG       + +A GRG +YR+EIWGR
Sbjct: 124 GSGQGATARVVEGYLGRNSITIQLQSARGRGFHYRIEIWGR 164


>UniRef50_Q4V4H7 Cluster: IP04046p; n=4; Sophophora|Rep: IP04046p -
           Drosophila melanogaster (Fruit fly)
          Length = 112

 Score = 35.5 bits (78), Expect = 0.88
 Identities = 20/42 (47%), Positives = 23/42 (54%)
 Frame = +1

Query: 253 SGASQSGSIRLTHGGLGSTFAAFDITNAAGRGLNYRVEIWGR 378
           SGAS S    L  GG G  FA  ++     RG+N  VEIWGR
Sbjct: 75  SGASPS----LYSGGPGYRFATVNLRGQVNRGINSTVEIWGR 112


>UniRef50_A5K036 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium vivax|Rep: Putative uncharacterized protein -
            Plasmodium vivax
          Length = 1452

 Score = 32.7 bits (71), Expect = 6.2
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = -2

Query: 483  LTVRSL*INLDFVWLNCTHELRPKCYCYFLYIVFLTSPNFHPVVQSPAGCVRNVKSGKGG 304
            + + +L IN   +++N +++LR     YF  ++ L     H  + SP G    +  G+GG
Sbjct: 1212 IMLNTLRINNTNLFINLSYDLRKNNLDYFYLLLLLNFYGLHDSLISPGGVEDPLSGGEGG 1271

Query: 303  TE 298
             E
Sbjct: 1272 EE 1273


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 531,252,210
Number of Sequences: 1657284
Number of extensions: 10417720
Number of successful extensions: 19967
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19964
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38738010471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)