Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0498
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ...    27   9.5  
AC006633-6|AAK68378.4|  578|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
           protein F54G2.2 protein.
          Length = 1023

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 271 RTVMPHFSSAYGVDASTGRRKQSQWVSPR*HHRSTDEILTSQKS 140
           RT++P+  +A    A    +   Q  +PR +HR T+EI+    S
Sbjct: 250 RTILPNRRTARRAGAGEHFQNVVQIETPRAYHRETEEIIDDTAS 293


>AC006633-6|AAK68378.4|  578|Caenorhabditis elegans Hypothetical
           protein F35B3.7 protein.
          Length = 578

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 196 PIDFVCAYRYSHQRHT 243
           PIDFV + RYSHQ  T
Sbjct: 302 PIDFVTSTRYSHQEAT 317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,290,454
Number of Sequences: 27780
Number of extensions: 250161
Number of successful extensions: 525
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)