Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0497
         (775 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    28   0.072
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    25   0.67 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   2.1  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   2.1  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   6.3  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   6.3  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   8.3  
AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochr...    21   8.3  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 28.3 bits (60), Expect = 0.072
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 97  STFHCR-TGNPIPVPWWLKDSSVFHCSSSSIRLQNVCK 207
           +TF C   GNPI    WLKD      + + +R+++V K
Sbjct: 345 ATFTCNFEGNPIKTISWLKDGHPIDHNEAVLRIESVRK 382


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 95  HDFFHRTSNELQLRCWQ 45
           ++ FH  S+E+ L CWQ
Sbjct: 363 NELFHLGSDEVNLTCWQ 379


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +2

Query: 20  ACGGSILTPASILTAAHCWFDGRNRAVRFTVVLGTP----FLFHGGLRIQASSIAVHHQY 187
           ACG  IL  A++  +        +R+V   + +G P    FL  GG  +  SSI ++ ++
Sbjct: 529 ACGIMILV-ANVAISFGYLISCVSRSVSMALSIGPPLVIPFLLFGGFFLNVSSIPIYFKW 587


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +2

Query: 20  ACGGSILTPASILTAAHCWFDGRNRAVRFTVVLGTP----FLFHGGLRIQASSIAVHHQY 187
           ACG  IL  A++  +        +R+V   + +G P    FL  GG  +  SSI ++ ++
Sbjct: 529 ACGIMILV-ANVAISFGYLISCVSRSVSMALSIGPPLVIPFLLFGGFFLNVSSIPIYFKW 587


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = +2

Query: 191 FRTFANDIAMLYLPRRIIFNHGYSQFH 271
           F   A  + + Y P   ++ H Y+++H
Sbjct: 151 FHAAATSLPLHYPPPPPVYTHHYARYH 177


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 176 ELQWKTLESLSHHG 135
           +L W ++ SLSH G
Sbjct: 375 DLSWNSISSLSHGG 388


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -3

Query: 92  DFFHRTSNELQLRCW 48
           + FH   +E+ L CW
Sbjct: 395 ELFHLGGDEVNLECW 409


>AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q3 protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 116 LGTPFLFHGGLRIQASSIAVHHQYD 190
           LG  F+   GL++  S+I   H YD
Sbjct: 86  LGEDFVTCNGLKLPKSTITHLHIYD 110


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,684
Number of Sequences: 336
Number of extensions: 4791
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)