Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0497
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.03c |||aminotransferase class-III, unknown specificty|S...    28   1.3  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    28   1.3  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    28   1.7  
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb...    27   2.3  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    27   3.9  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   6.9  
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    25   9.1  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.1  

>SPBC1773.03c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 281 SVANGIGCTHG*ILYDGVST 222
           S+AN IGC HG  +Y G+ T
Sbjct: 399 SLANKIGCEHGVFVYPGMGT 418


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 261 LYPWLNIIRRGKYSIAMSFANVLKSY 184
           ++ WL +I   +Y +A  FAN LK Y
Sbjct: 462 IWKWLLVISVDQYHLATKFANYLKEY 487


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/74 (20%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +1

Query: 241 NIQPWVQPIPLATDSLLSTDKAGMWAVAAGYGRYSDVINPTTNTMARNVF-LQTISLETC 417
           +IQP ++P  L+  + + + +     +     ++SD+++  ++ +  N+  +  +  + C
Sbjct: 644 SIQPNIRPFLLSRSTFVGSGRYAAHWLGDNKSQWSDMVSSISSILTFNLLGIPMVGADVC 703

Query: 418 RGYYGNVVLDSNIC 459
            GY GN   D  +C
Sbjct: 704 -GYNGNT--DEELC 714


>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 404 DIVCRKTFLAIVFVVGFITSEYLP 333
           D  C KT L  VF +G+  +EY+P
Sbjct: 16  DGACGKTSLLSVFTLGYFPTEYVP 39


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 357 SYDKHDGEKCFSTNYILRNLPWLL 428
           S D HD    F   Y++ N PW +
Sbjct: 123 STDDHDWHDIFMIGYLISNAPWFI 146


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 29  GSILTP-ASILTAAHCWFDGRNRAVRFTVVLGTPF 130
           G ILTP  S +T    W    N+  RF++V+G PF
Sbjct: 429 GIILTPEVSAVTLCLFW----NKMTRFSLVVGAPF 459


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 526 WWLIVNGLQNLLGKYQHRQLH 464
           W  + N ++NL+G Y + +LH
Sbjct: 223 WVAVTNYMKNLVGNYGYTELH 243


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 170 AVHHQYDFRTFANDIAMLYLPRRIIFNHGY-SQFH*PLIRF*ALT 301
           A+H Q + +   N++  +YL   +  + G  S+ H  L++F  LT
Sbjct: 205 AIHEQLEGKEVVNELVAVYLIYTVFKDQGISSKAHKALVQFNGLT 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,416,558
Number of Sequences: 5004
Number of extensions: 75773
Number of successful extensions: 176
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)