Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0497
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777     31   1.3  
03_04_0164 - 17893385-17893541,17893816-17893888,17894453-178946...    29   3.1  
10_04_0002 - 7372425-7372601,7372697-7372780,7372859-7373010,737...    29   5.4  
11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485     28   7.2  
07_03_1253 + 25201629-25202084,25203264-25203399,25204564-252047...    28   9.5  

>02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777
          Length = 778

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
 Frame = +1

Query: 34  DPYPCQHLNCSSLLVRWKKSCSTFHCRTGN-----PIPVPWWLKDSSV 162
           +P          L  +W   C   H R+ N     P P+PWW + SSV
Sbjct: 555 EPQTSHKAELMELRRKWGILCQRVHSRSHNDQASVPSPMPWWCRPSSV 602


>03_04_0164 -
           17893385-17893541,17893816-17893888,17894453-17894612,
           17894724-17894835,17895241-17895338,17895789-17896209,
           17896398-17896549,17896914-17897122,17898000-17898087,
           17899448-17899708
          Length = 576

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +1

Query: 406 LETCRGYYGNVVLDSNICTSGVGGVGICRGDSGGH*LLT--TKEKNGSLVLAHSWQGT 573
           L    GY   +   + +C  GV  V I  G  GG  LL   T++  G+++    ++GT
Sbjct: 359 LSRSNGYLSELAAAAYVCNGGVQRVHIIDGTVGGSLLLELFTRDGVGTMIARDMYEGT 416


>10_04_0002 -
           7372425-7372601,7372697-7372780,7372859-7373010,
           7373229-7373324,7373406-7373554,7373723-7373788,
           7373925-7373994,7374106-7374236,7376464-7376471,
           7377946-7378002
          Length = 329

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 316 AVAAGYGRYSDVIN-PTTNTMARNVFLQTISLETCRGYYG 432
           +V  G+GR S V+  PT N  A N F   +S  T R Y+G
Sbjct: 176 SVIKGFGRGSKVLGIPTANLPAEN-FSDVLSEHTSRVYFG 214


>11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485
          Length = 483

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 89  FFHRTSNELQLRCWQG*GSIRRTRPVI 9
           FF RT NEL +   QG  SIR T  V+
Sbjct: 169 FFWRTENELDIGSGQGTSSIRSTSSVL 195


>07_03_1253 +
           25201629-25202084,25203264-25203399,25204564-25204700,
           25205439-25206121,25206767-25206911,25207669-25207701
          Length = 529

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 638 MLDPGPEGRYAGENRRET*FAAVPCHE*ANTNEPFFSLVVNS 513
           ++DP  EGRY+    RE    A  C   +  N P  S VV++
Sbjct: 338 IMDPALEGRYSPAAAREAAAVAYRCLSGSPKNRPDMSAVVDA 379


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,201,759
Number of Sequences: 37544
Number of extensions: 540668
Number of successful extensions: 1573
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1566
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)