Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0497
         (775 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof...    29   3.4  
At2g25010.1 68415.m02990 expressed protein                             29   4.5  
At3g29390.1 68416.m03693 hydroxyproline-rich glycoprotein family...    28   7.9  
At1g03720.1 68414.m00352 cathepsin-related contains weak similar...    28   7.9  

>At4g08710.1 68417.m01439 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 715

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 523 WLIVNGLQNLLGKYQHRQLH*CRC*NPKLHYRNSHGRFLRI*FVEKHF 380
           W IVNG+    G  +H  +    C N KL Y+N+      + F  KHF
Sbjct: 264 WFIVNGVPIRYGILEHALISDFNCKNYKLGYKNTG----NLDFKRKHF 307


>At2g25010.1 68415.m02990 expressed protein
          Length = 509

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 16  GRVRRIDPYPCQHLNCSSLLVRWKKSCSTFHCRTG 120
           G  R+I P    +   S+L+ RW++  +TFH   G
Sbjct: 61  GYFRKIGPMSLNNSLISALVERWRRETNTFHLPLG 95


>At3g29390.1 68416.m03693 hydroxyproline-rich glycoprotein family
           protein sequencing discrepancy between cDNA and genomic
           sequence prevents representation of entire coding
           sequence
          Length = 578

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 506 PPESPRQIPTPPTPLVQMLESKTTLP**PRQVSKDIVCRKTFL 378
           PP  P+ I  PP+  +    SK+ LP  PR  +   +  K+ L
Sbjct: 480 PPPPPKTIAPPPSKTMSPPSSKSMLPPPPRSKTMSPLSSKSML 522


>At1g03720.1 68414.m00352 cathepsin-related contains weak similarity
           to Cathepsin L precursor (EC 3.4.22.15) (Major excreted
           protein) (MEP) (Cyclic protein-2) (CP-2)
           (Swiss-Prot:P07154) [Rattus norvegicus]
          Length = 274

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = +1

Query: 424 YYGNVVLDSN-ICTSGVGGVGICRGDSGGH*LLT-----TKEKNGSLVLAHSW 564
           + GNV   SN +    V GV +  GD+GGH +L      TKE     ++ +SW
Sbjct: 193 FIGNVSKKSNGLSIYNVSGVDMEDGDAGGHVVLIVGYGYTKENKLFFLIQNSW 245


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,190,300
Number of Sequences: 28952
Number of extensions: 415985
Number of successful extensions: 1155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)