Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0496
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   2.7  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.4  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    25   8.4  

>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 553 LLNSNTKELTRH*VGTYYELHFEIKQ*KSISTKNYFYQK 669
           L NS +  +++   GTYY L +     K    +NYFY K
Sbjct: 552 LWNSRSFWVSKVFKGTYYRLSYLFSSLKYTLAENYFYYK 590


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 275 FFLIDCMLIIWYSINN*FYLRNFIIAYVFSIHYLNNLIFFF 397
           FF +   L   +S +  F+L    I Y  S   L+ L FFF
Sbjct: 120 FFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFF 160


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 501 VPTIYLKNP*HLPNFIFSS*FEHK 572
           +P  +L  P H+PNF+ +S   HK
Sbjct: 338 IPPSHLSFPIHVPNFMITSLLLHK 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,737
Number of Sequences: 5004
Number of extensions: 53681
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)