Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0496
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1099 - 8700627-8700710,8701148-8701200,8701287-8701344,870...    28   6.6  

>01_01_1099 -
           8700627-8700710,8701148-8701200,8701287-8701344,
           8701886-8702032,8702386-8702448,8702559-8702630,
           8703154-8703234,8703312-8703362,8703519-8703615,
           8704154-8704384,8704882-8705142,8705231-8705394,
           8705547-8705586,8707223-8707323
          Length = 500

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +1

Query: 7   LIMMKRFRLNKNCCTFLKDNKIIHRF*MKLLDFNEVYI 120
           L+M K F ++K+ CT L D KI        +DF++VYI
Sbjct: 419 LVMAKSF-VSKHLCTSLLDVKIAPVVAKLCIDFSDVYI 455


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,937,685
Number of Sequences: 37544
Number of extensions: 233866
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)