Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0494
(722 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765... 54 2e-07
06_03_1473 - 30382528-30382731,30382814-30382930,30383048-303831... 48 6e-06
04_03_0818 + 20014685-20014687,20014792-20014831,20014988-200150... 41 9e-04
06_02_0364 + 15178583-15178881,15179652-15179723,15179853-151799... 37 0.019
08_02_1287 - 25886509-25886766,25886887-25887004,25887098-258871... 31 0.70
12_02_0154 + 14494319-14495857 30 1.6
02_05_0853 + 32261705-32261794,32261895-32262027,32262117-322629... 30 2.1
09_04_0391 + 17248698-17248790,17248913-17249851,17249942-17250223 29 2.8
09_04_0390 + 17241546-17241638,17241715-17242653,17242753-17243037 29 3.7
12_01_0740 + 6646471-6649407 29 4.9
12_01_0722 + 6355972-6359031 29 4.9
05_03_0188 + 9417186-9417306,9417418-9417604,9417669-9417801,941... 29 4.9
08_02_0986 + 23328056-23328145,23328289-23329227,23329313-233295... 28 6.5
05_07_0037 - 27229351-27230037,27230305-27230330,27230536-27231961 28 6.5
05_01_0455 - 3614011-3614503,3615007-3615072,3615154-3615347,361... 28 6.5
09_04_0399 + 17283968-17284264 28 8.6
08_02_0880 + 22203440-22204324,22204763-22204876,22204964-222054... 28 8.6
02_05_0854 - 32267047-32267298,32267383-32268194,32268289-322684... 28 8.6
>02_04_0064 -
19375497-19375580,19375659-19375733,19376359-19376514,
19377016-19377093,19377328-19377428,19377570-19377717,
19378172-19378316,19378803-19378906,19380257-19380385,
19380526-19380636,19380734-19380863,19381915-19382034,
19382360-19382481,19382965-19383048,19383241-19383357,
19383442-19383522,19384138-19384197,19384398-19384440,
19384528-19384626,19385353-19385564,19385964-19386091,
19386246-19386396
Length = 825
Score = 53.6 bits (123), Expect = 2e-07
Identities = 22/62 (35%), Positives = 39/62 (62%)
Frame = +3
Query: 291 FGYDIANFYEIHHEYGTMEDFEALLKKANELDIKVVLDLVPNHTSNESVWFQEALNGNEK 470
FGY + NF+ +GT ED ++L+ KA+EL + V++D+V +H SN ++ +G +
Sbjct: 365 FGYHVTNFFAPSSRFGTPEDLKSLIDKAHELGLVVLMDVVHSHASNNTLDGLNGFDGTDT 424
Query: 471 YY 476
+Y
Sbjct: 425 HY 426
>06_03_1473 -
30382528-30382731,30382814-30382930,30383048-30383129,
30383211-30383278,30383444-30383545,30383994-30384122,
30384561-30384623,30384781-30384897,30385210-30386116,
30386225-30386494,30386929-30386998,30387114-30387273
Length = 762
Score = 48.4 bits (110), Expect = 6e-06
Identities = 22/57 (38%), Positives = 35/57 (61%)
Frame = +3
Query: 291 FGYDIANFYEIHHEYGTMEDFEALLKKANELDIKVVLDLVPNHTSNESVWFQEALNG 461
FGY + NF+ + GT ED + L+ KA+ L ++V++D+V +H SN + LNG
Sbjct: 233 FGYHVTNFFAVSSRSGTPEDLKYLVDKAHSLGLRVLMDVVHSHASNN---VTDGLNG 286
>04_03_0818 +
20014685-20014687,20014792-20014831,20014988-20015025,
20015359-20015485,20015571-20015797,20015919-20016064,
20016166-20016284,20016711-20016799,20016881-20017003,
20017123-20017158,20017464-20017562,20017642-20017833
Length = 412
Score = 41.1 bits (92), Expect = 9e-04
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +3
Query: 249 SCWLSPIFKSPMVDFGYDIANFYEIHHEYGTMEDFEALLKKANELDIKVVLDLVPNH 419
S WL P +S + GY N Y + YG++ D +ALL+K E +++ + D+V NH
Sbjct: 56 SAWLPPPTQSLSPE-GYLPQNLYCLDSCYGSLHDLQALLRKMKEHNVRAMADVVINH 111
>06_02_0364 +
15178583-15178881,15179652-15179723,15179853-15179917,
15180890-15180934,15182493-15183170,15183376-15183410,
15183647-15183736,15183896-15183985,15184164-15184262,
15184938-15185013,15185473-15185588
Length = 554
Score = 36.7 bits (81), Expect = 0.019
Identities = 14/59 (23%), Positives = 35/59 (59%)
Frame = +3
Query: 300 DIANFYEIHHEYGTMEDFEALLKKANELDIKVVLDLVPNHTSNESVWFQEALNGNEKYY 476
++ N++ + +G+ +DF+ L+ +A+ L + V+LD+V ++ S + + +G+ Y
Sbjct: 491 EVTNYFSVSSRFGSPDDFKKLVDEAHGLGLVVLLDIVHSYASADELVGLSLFDGSNDCY 549
>08_02_1287 -
25886509-25886766,25886887-25887004,25887098-25887177,
25887258-25887338,25887493-25887576,25888013-25888171,
25888660-25888752,25888928-25888945,25889194-25889280,
25889634-25889760,25889849-25889920,25890319-25890404,
25890519-25890626,25890709-25890850,25891432-25891508,
25891902-25892054,25892411-25892503,25892608-25892790,
25892924-25893334
Length = 809
Score = 31.5 bits (68), Expect = 0.70
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 139 ILYQIYPRSFADSDGDGI---GDLNGITSKLEYIKELGVGAV 255
++Y+++ R F + G G SKL+Y+KELGV V
Sbjct: 246 VIYEMHLRGFTKHSSSNVEHPGTYIGAISKLDYLKELGVNCV 287
>12_02_0154 + 14494319-14495857
Length = 512
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 539 WLSHFRGSAWEYKEEVGKYYLHQFAVGQPDLNYRNQDVVD 658
WLS A++ G+Y L G+PDL+ +N+D VD
Sbjct: 65 WLSELIDGAYQ-----GRYLLDTIGCGEPDLDDKNRDEVD 99
>02_05_0853 +
32261705-32261794,32261895-32262027,32262117-32262928,
32263020-32263271
Length = 428
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +3
Query: 255 WLSPIFKSPMVDFGYDIANFYEIH-HEYGTMEDFEALLKKANELDIKVVLDLVPNHTSNE 431
WL P +S + + GY Y++ +YG ++L++ + ++V+ D+V NH + E
Sbjct: 63 WLPPPSQS-VAEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTAE 121
>09_04_0391 + 17248698-17248790,17248913-17249851,17249942-17250223
Length = 437
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 255 WLSPIFKSPMVDFGYDIANFYEIH-HEYGTMEDFEALLKKANELDIKVVLDLVPNH 419
WL P S + GY Y++ +YGT + +L+ + IK V D+V NH
Sbjct: 64 WLPPPSHS-VAPQGYMPGRLYDLDASKYGTGAELRSLIAAFHSKSIKCVADIVINH 118
>09_04_0390 + 17241546-17241638,17241715-17242653,17242753-17243037
Length = 438
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 255 WLSPIFKSPMVDFGYDIANFYEIH-HEYGTMEDFEALLKKANELDIKVVLDLVPNH 419
WL P S + GY Y++ +YGT + +L+ + IK V D+V NH
Sbjct: 64 WLPPPSHS-VAPQGYMPGRLYDLDASKYGTGAELRSLIAAFHSKGIKCVADIVINH 118
>12_01_0740 + 6646471-6649407
Length = 978
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 154 YPRSFADSDGDGIGDLNGITSKLEYIKELGVGAVGF 261
Y +S + S+ + G + S L+Y+KEL +GA GF
Sbjct: 301 YLQSISVSNTNFSGTIPASISNLKYLKELALGASGF 336
>12_01_0722 + 6355972-6359031
Length = 1019
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 154 YPRSFADSDGDGIGDLNGITSKLEYIKELGVGAVGF 261
Y +S + S+ + G + S L+Y+KEL +GA GF
Sbjct: 342 YLQSISVSNTNFSGTIPASISNLKYLKELALGASGF 377
>05_03_0188 +
9417186-9417306,9417418-9417604,9417669-9417801,
9418673-9418752,9421940-9422011,9422211-9422282,
9422361-9422432,9422720-9422791,9423038-9423109,
9423335-9423406,9423497-9423568,9423648-9423722,
9423824-9423895,9424072-9424137,9424223-9424299,
9424642-9425021,9425112-9425310,9425380-9425538,
9425620-9425738,9425942-9426092,9426257-9426488,
9426573-9426723,9426808-9427125
Length = 1007
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 135 SLPPILNFSILYNDSTTCNEKQRQQTHCLHC 43
+L P + YN+ T C+ + THCL C
Sbjct: 81 NLNPFIKCDCKYNNGTLCHINKLCSTHCLAC 111
>08_02_0986 +
23328056-23328145,23328289-23329227,23329313-23329570,
23330384-23330692
Length = 531
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 255 WLSPIFKSPMVDFGYDIANFYEIH-HEYGTMEDFEALLKKANELDIKVVLDLVPNH 419
WL P S GY Y++ +YGT + ++L++ ++ +++ + D+V NH
Sbjct: 63 WLPPPSHSVSPQ-GYMPGRLYDLDASKYGTEAELKSLIEAFHDKNVECLADIVINH 117
>05_07_0037 - 27229351-27230037,27230305-27230330,27230536-27231961
Length = 712
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 425 KRKCLVPRSSQWQRKILQLFRLGR-RNHRENGNRQPPNNWLSHFR 556
K++C PR+++ ++Q F+L R RN +P + WL +
Sbjct: 518 KQQCYNPRTARMDLDLMQ-FQLSRMRNQESQARTEPGDRWLKRLQ 561
>05_01_0455 -
3614011-3614503,3615007-3615072,3615154-3615347,
3615562-3615657,3615790-3615829,3616729-3616856
Length = 338
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 395 CFGSCTKSYIKRKCL-VPRSSQWQRKILQLFRLGRRNHRENGNRQPPNNWLSH 550
C+G + +I R+C P+ + +R + RR G PP++W SH
Sbjct: 132 CYGCGERGHILRECKNSPKDLKQERGYSRSRSPRRRRSPSYGKSGPPSHWGSH 184
>09_04_0399 + 17283968-17284264
Length = 98
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 163 SFADSDGDGIGDLNGITSKLEYI-KELGVGAVGF 261
S+AD+DGDG D + +EY K LG+ V +
Sbjct: 65 SYADADGDGYIDDGEVDGLIEYAQKSLGLRIVAY 98
>08_02_0880 + 22203440-22204324,22204763-22204876,22204964-22205455,
22205646-22205819,22206589-22206978,22209927-22210022,
22210645-22210760,22210872-22211042,22211126-22211285,
22211388-22211573,22211665-22211793,22211918-22211996,
22212159-22212268
Length = 1033
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 306 ANFYEIHHEYGTMEDFEALLKKANELDIKVVLDL 407
A+FY + E G+ E F+ ++ + E+D K V++L
Sbjct: 900 AHFYWVTREPGSFEWFKGVMNEVAEMDKKGVIEL 933
>02_05_0854 -
32267047-32267298,32267383-32268194,32268289-32268421,
32268530-32268619
Length = 428
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 255 WLSPIFKSPMVDFGYDIANFYEIH-HEYGTMEDFEALLKKANELDIKVVLDLVPNHTSNE 431
WL P S + + GY Y++ +YG ++L++ + ++V+ D+V NH + E
Sbjct: 63 WLPPPSHS-VGEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTAE 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,154,624
Number of Sequences: 37544
Number of extensions: 445300
Number of successful extensions: 1196
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -