Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0494
         (722 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.)              91   6e-19
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)                  76   3e-14
SB_22908| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_37509| Best HMM Match : PAE (HMM E-Value=0)                         30   1.7  
SB_59641| Best HMM Match : PAE (HMM E-Value=0)                         30   1.7  
SB_56875| Best HMM Match : LON (HMM E-Value=0)                         30   2.2  
SB_40706| Best HMM Match : Extensin_2 (HMM E-Value=7.9)                29   5.0  
SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35)              28   8.8  
SB_14954| Best HMM Match : Pox_TAP (HMM E-Value=9.3)                   28   8.8  

>SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 91.5 bits (217), Expect = 6e-19
 Identities = 39/82 (47%), Positives = 60/82 (73%), Gaps = 1/82 (1%)
 Frame = +3

Query: 255 WLSPIFKSPMVDFGYDIANFYEIHHEYGTMEDFEALLKKANELDIKVVLDLVPNHTSNES 434
           +LSPIFKSPMVD GYD+++F +++  +GTMEDFE+LL+  +   +K++LD VPNHTS++ 
Sbjct: 69  YLSPIFKSPMVDNGYDVSDFMDVNPMFGTMEDFESLLQDIHSRGMKLLLDFVPNHTSDQH 128

Query: 435 VWFQEA-LNGNEKYYNYFVWED 497
            WF E+  N +     +++W D
Sbjct: 129 DWFLESRSNRHNPRREWYIWRD 150



 Score = 88.2 bits (209), Expect = 6e-18
 Identities = 36/62 (58%), Positives = 44/62 (70%)
 Frame = +2

Query: 527 PPNNWLSHFRGSAWEYKEEVGKYYLHQFAVGQPDLNYRNQDVVDEMKNIIRFWLGKGIAG 706
           PPNNWLS F GSAW    +  +YYLHQF   QPDLN+RN DVV+  K ++ FWL KG+ G
Sbjct: 157 PPNNWLSVFGGSAWSLDRKTNQYYLHQFFKEQPDLNFRNPDVVNATKEVLGFWLDKGVDG 216

Query: 707 FQ 712
           F+
Sbjct: 217 FR 218



 Score = 37.9 bits (84), Expect = 0.008
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = +1

Query: 172 DSDGDGIGDLNGITSKLEYIKELGV 246
           DS+GDG GDL+GI S+L+Y+  LGV
Sbjct: 41  DSNGDGNGDLSGIRSRLDYLDYLGV 65


>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
          Length = 1093

 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
 Frame = +2

Query: 440  VPRSSQWQRKILQLFRLGRRNHRENGN--RQPPNNWLSHFRGSAWEYKEEVGKYYLHQFA 613
            VP  +  + K  +   + + N + N    R   NNW S   GSAWE   +  +YYLHQF+
Sbjct: 728  VPNHTSKKNKWFEESSVNKTNSKRNWYVWRDSANNWPSMNGGSAWEKDPKTNQYYLHQFS 787

Query: 614  VGQPDLNYRNQDVVDEMKNIIRFWLGKGIAGF 709
            V QPDLNY  + VV  +  +++FW  KG+ GF
Sbjct: 788  VDQPDLNYHEEAVVKAINGVMKFWSEKGVDGF 819



 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 26/61 (42%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
 Frame = +3

Query: 318 EIHHEYGTMEDFEALLKKANELDIKVVLDLVPNHTSNESVWFQE-ALNGNEKYYNYFVWE 494
           ++++  G MEDF+ LLKKA++  ++V++D VPNHTS ++ WF+E ++N      N++VW 
Sbjct: 698 DVNNALGKMEDFQNLLKKAHDRKMRVIVDFVPNHTSKKNKWFEESSVNKTNSKRNWYVWR 757

Query: 495 D 497
           D
Sbjct: 758 D 758


>SB_22908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 769

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +3

Query: 291 FGYDIANFYEIHHEYGTMEDFEALLKKANELDIKVVLDLVPNHTSNESVWFQEALNGNEK 470
           FGY + +F+     YGT ++   L+  A+   I V+LD+V +H +   +      +G E 
Sbjct: 361 FGYQVTSFFAASSRYGTPDELRLLIDTAHSYGIVVLLDIVHSHAAKNVMDGLNQFDGTEG 420

Query: 471 YY 476
            Y
Sbjct: 421 CY 422


>SB_37509| Best HMM Match : PAE (HMM E-Value=0)
          Length = 483

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 503 HRENGNRQPPNNWLSHFRGSAWEYKEE 583
           +RE G+ +  +NW+ HF G AW Y EE
Sbjct: 107 YRE-GSGKGSDNWVLHFFGGAWCYDEE 132


>SB_59641| Best HMM Match : PAE (HMM E-Value=0)
          Length = 1252

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 503 HRENGNRQPPNNWLSHFRGSAWEYKEE 583
           +RE G+ +  +NW+ HF G AW Y EE
Sbjct: 876 YRE-GSGKGSDNWVLHFFGGAWCYDEE 901


>SB_56875| Best HMM Match : LON (HMM E-Value=0)
          Length = 925

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +3

Query: 258 LSPIFKSPMVDFGYDIANFYEIHHEYGTMEDFEALLKKANELDIKVVLDLV 410
           L P+ ++P+      +   Y+I      M DF  L K+ N+++ K ++DLV
Sbjct: 140 LIPVHRNPVFPRFVKMLEVYQISEFRKNMNDFGPLGKQVNQINDKSLMDLV 190


>SB_40706| Best HMM Match : Extensin_2 (HMM E-Value=7.9)
          Length = 301

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = -1

Query: 245 TPNSLIYSNFEVIPFKSPIPSPSLSAKDLG*IWYKIEVSHQS*TSPFFIMIPLHATKSKD 66
           T + L+Y  +  +PF S IP  +L  KD     Y +   + S   PF   IP+     KD
Sbjct: 216 THHYLLYQGYPSLPFISRIPITTLYIKDTH--QYPLYQGYPS--LPFISRIPITTLYIKD 271

Query: 65  SKH 57
           + H
Sbjct: 272 THH 274


>SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35)
          Length = 1078

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 515 GNRQPPNNW-LSHFRGSAWEYKEEVGKYYLHQFAVGQPDLNYRNQDVVDEMKNIIRFWLG 691
           G R+    W +  F+   W  +E+ G +Y     +    LN   +   DE+K  + FW+G
Sbjct: 473 GTREGLQIWRIEKFKVKVWS-REDYGSFYDGDSYI---ILNTYKESGEDELKYDVHFWIG 528

Query: 692 K 694
           K
Sbjct: 529 K 529


>SB_14954| Best HMM Match : Pox_TAP (HMM E-Value=9.3)
          Length = 432

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +2

Query: 500 NHRENGNRQPPNNWLSHFRGSAWEYKEEVGKYYLHQFAVGQPDLNYRNQDVVDEMKNI 673
           NH  N     P   + HF    W + + VGK ++  F + + +L YR+  +V+ +  I
Sbjct: 373 NHAMNAINSMPKEAM-HFL--YWGFPKSVGKAFVADFEINKKELRYRSFYLVNMLSII 427


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,123,266
Number of Sequences: 59808
Number of extensions: 506397
Number of successful extensions: 1790
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1784
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)