Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0492
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    27   3.0  
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac...    26   3.9  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    26   3.9  
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    26   5.2  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    26   5.2  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      25   6.9  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    25   9.1  
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    25   9.1  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   9.1  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    25   9.1  
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    25   9.1  

>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 3/112 (2%)
 Frame = +3

Query: 234 SQSFSISGSAEGEIRIFSRVLRSFASGGLALENVVAEATASVSLADNIIVSDIGAAITI- 410
           S S SISG+ E        V  +  SG      ++AEA+ +V     +I   +G   T  
Sbjct: 202 SASGSISGTVEVIEPTAGTVTTTIYSGDQEYTTILAEASGTVPGTVEVIEPAVGTVTTTT 261

Query: 411 --GDVKSNLQINLFGREVGPAVNNFLEKIPVYLTDTQPRSAVFWSTSPNSSS 560
             G V+    +      V   V      +    T  Q  S  F +T P S S
Sbjct: 262 YSGSVEYTTTLVPASGSVSGTVEVVEPAVGTVTTTLQSGSQAFTTTVPASGS 313


>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = -1

Query: 365 EGDGSGSLSNDVLKGKSSGSERPQD-----AAENADFSFS 261
           EG     LSND L+   S +  P D     + ENAD+SFS
Sbjct: 153 EGYTYPKLSNDNLEVDHSNTNEPADENKNQSIENADYSFS 192


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 392 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENAD 273
           +  DN ++     SGS + D +  +  G+E+ +D  EN +
Sbjct: 325 NAVDNKILLIAMSSGSEALDAILAQMGGTEKVEDVLENVN 364


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 399 AITIGDVKSNLQINLFGREVGPAVNNFL-EKIPVYLT 506
           AITIGD  + L  +   +++GP V +F  + +P +LT
Sbjct: 178 AITIGDNSTLLYTSWLFQKIGPPVLSFSDDDVPGFLT 214


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -1

Query: 362 GDGSGSLSNDVLKGKSSGSERPQ-DAAENADFSFSGTTDAE 243
           G GSG L ND L+ K S    P     +NA  S  G  + +
Sbjct: 117 GPGSGKLLNDTLQSKISSIHMPHVQQGDNAVVSSVGGPETD 157


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 75  ERISRSQQFTDFIEQV*DHDVKDA 4
           E +SR QQF D +  +   ++KDA
Sbjct: 63  EEVSRRQQFVDKLRTILSTEIKDA 86


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 474 NFLEKIPVYLTDT-QPRSAVFWSTSPNSSST 563
           NFL+ +P Y+ D   P    F   +PN++++
Sbjct: 452 NFLQTLPQYMNDVYNPSGLAFNPVNPNANNS 482


>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +3

Query: 258 SAEGEIRIFSRVLRSFASGGLALENVVAEA--TASVSLADNIIVSDI-GAAITIGDVK 422
           S +GEI   + V  +  + G  L NVV EA   A     D +I SD+  AA  + D+K
Sbjct: 320 SKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARKVADLK 377


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 448 PKRLIWRLDLTSPI 407
           PK LIWR  LT+P+
Sbjct: 436 PKELIWRSRLTNPV 449


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 395 SDVTDNDVVCEGDGSGSLSNDVLKGK-SSGSERPQDAAENADF 270
           SDV D +V+ E   +  +SN V + K  S  E   D A++  F
Sbjct: 404 SDVEDTEVIIEDQDNQEISNHVAEEKIDSDEEETIDDAKSEMF 446


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 476 LPREDPCLPDGYAAEVSRVLEYV 544
           LP +D C    YAAEV+  LEY+
Sbjct: 252 LPEKDACF---YAAEVTAALEYL 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,667
Number of Sequences: 5004
Number of extensions: 44121
Number of successful extensions: 160
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)