Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0492
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1110 + 30973202-30973870 31 0.76
12_01_0204 + 1539859-1540158 30 1.3
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499... 30 1.3
05_05_0321 + 24091997-24092530 29 3.1
01_06_0034 + 25769436-25769701,25769749-25769887 29 3.1
12_01_0506 + 4017568-4017716,4018171-4018474 29 4.1
06_03_0433 - 20718726-20719895 29 4.1
12_01_0035 - 295988-296408,296645-296813,296929-296965,297097-29... 28 5.4
04_01_0058 + 592846-593185,594641-595182,596298-596987,597078-59... 28 5.4
03_02_0114 + 5704002-5704037,5704547-5704666,5705040-5705076,570... 28 7.1
12_02_0959 + 24818310-24818369,24818689-24819136,24819265-248194... 27 9.4
12_01_0149 - 1150949-1151041,1151145-1151190,1151343-1151460,115... 27 9.4
07_03_1482 - 26864793-26865043,26865325-26865454,26865564-268657... 27 9.4
06_03_0291 + 19198302-19198333,19199218-19199734,19200171-192003... 27 9.4
03_02_0078 + 5476288-5476626,5477474-5477670,5477750-5477885,547... 27 9.4
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109... 27 9.4
01_01_0361 + 2838979-2841745,2841897-2842285 27 9.4
>04_04_1110 + 30973202-30973870
Length = 222
Score = 31.1 bits (67), Expect = 0.76
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = -2
Query: 427 LDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPLM 248
L + + + +P S T+ S+R+T A A ++A P + L L M +A+P +
Sbjct: 97 LPKAAALAVVSPTSSTVESSSRDTPAAAPVAAAAKAQVPASPSLDLSLGMSAMVAAQPFL 156
>12_01_0204 + 1539859-1540158
Length = 99
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 88 YAGSWSPPGASDIINFSGRVTDVKADD 168
+AGSW+ G + +F GRVT V+ D
Sbjct: 38 HAGSWNGEGQGGLAHFGGRVTRVRRGD 64
>03_05_1122 +
30546314-30549277,30549615-30549693,30549857-30549945,
30550422-30550538,30550873-30551111,30552279-30552365,
30552732-30552831,30553319-30553532,30553617-30553777
Length = 1349
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = -1
Query: 461 SNFASEEIDLEVRFDIANSYCSSDVTDN---DVVCEGDGSGSLSNDVLKGKSSG 309
SN +D E +A C D+ + D++ EGD G L+ D + G
Sbjct: 54 SNSMKMHVDAETAGGVALDVCKGDILEKKQCDIIAEGDRGGVLTVDTCNAEEDG 107
>05_05_0321 + 24091997-24092530
Length = 177
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/80 (22%), Positives = 32/80 (40%)
Frame = -1
Query: 512 RIRQVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSND 333
R RQV R E++ S+F+ + + ++ D +N GDG G +
Sbjct: 13 RARQVGRSREEELLGLLSDFSGDSGEFGRELSFSDLVVVEDTANNPSPRGGDGGGDRAAP 72
Query: 332 VLKGKSSGSERPQDAAENAD 273
+G RP ++E +
Sbjct: 73 TAAAAENGQARPSSSSEQEE 92
>01_06_0034 + 25769436-25769701,25769749-25769887
Length = 134
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -1
Query: 392 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENAD---FSFSGTTDAETL 237
+V +D +C+G+G G + G ++ RPQ A E G DAE L
Sbjct: 16 EVESSDTICQGEGPGEGGHPDPAGPAAALLRPQVAGERLHGGWLQHPGRLDAEPL 70
>12_01_0506 + 4017568-4017716,4018171-4018474
Length = 150
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -1
Query: 479 EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLK-GKSSGS 306
++ DG ++ ++ E D+E++ D Y + DV + V E GSG V + G++SGS
Sbjct: 89 DLCDGSADNSNYEADMELKVDSEEEYVNMDVEVD--VGEATGSGCKGKAVEEHGEASGS 145
>06_03_0433 - 20718726-20719895
Length = 389
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/67 (29%), Positives = 30/67 (44%)
Frame = -1
Query: 413 ANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTTDAETLG 234
AN S+ T +D EG+ + +SND +G+ + AAE A+ S T E
Sbjct: 277 ANEASDSNETKSD---EGNVAAEVSNDQAANTEAGNSQEASAAEAANGSSEETKPVENQN 333
Query: 233 TARTKLS 213
T+ S
Sbjct: 334 DGNTESS 340
>12_01_0035 -
295988-296408,296645-296813,296929-296965,297097-297173,
297391-297631
Length = 314
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 323 GKSSGSERPQDAAENADFSFSGTTDAETLGTARTKLS 213
GK GSE AA N S S TT+ E G ++ + S
Sbjct: 7 GKEEGSESKTAAANNDGSSTSSTTEEEESGESQRRTS 43
>04_01_0058 +
592846-593185,594641-595182,596298-596987,597078-597233,
597277-597856,598601-598764,598907-599100,599702-599750,
599777-599806
Length = 914
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = -1
Query: 521 PRLRIRQVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSL 342
P+L + + + +L VV +S +I+++V + S SSD G+ + ++
Sbjct: 431 PKLNLTETEVNLDDNVVANNDTKSSGDINVDVCSNTGVSNRSSDTEPTKKETSGENTSNI 490
Query: 341 SNDVLK 324
NDVLK
Sbjct: 491 VNDVLK 496
>03_02_0114 +
5704002-5704037,5704547-5704666,5705040-5705076,
5705905-5705981,5706642-5706755,5706902-5706969,
5707051-5707129,5707367-5707511,5707627-5707731,
5707917-5707994,5708192-5708247,5708533-5708651,
5708853-5709096,5709203-5709385,5709956-5710264,
5710350-5710399,5711042-5711102,5711184-5711267,
5711461-5711577,5711665-5711831,5711938-5712010,
5712497-5712581,5712693-5712886,5713073-5713228
Length = 918
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -1
Query: 446 EEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSER-PQDAAENADF 270
EE D E+ D+ + CSSD + + D S NDV SG + +D ++ ++
Sbjct: 419 EEYD-EIFDDLEDGSCSSDAYTDSEDGDVDKEYSTDNDVDGSYDSGEDNIEEDMEDDTEY 477
Query: 269 SFSGT 255
S G+
Sbjct: 478 SSGGS 482
>12_02_0959 +
24818310-24818369,24818689-24819136,24819265-24819482,
24819651-24819929
Length = 334
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = -1
Query: 392 DVTDNDVV---CEGDGSGSLSNDVLKGKSSGSER 300
++ +ND++ C G G+GS S DVL +SG E+
Sbjct: 73 ELQENDLLFFTCNGHGNGSCSFDVLIFDASGCEK 106
>12_01_0149 -
1150949-1151041,1151145-1151190,1151343-1151460,
1151541-1151637,1151711-1151908,1152024-1152086,
1152384-1152443,1152558-1152660,1154398-1154507
Length = 295
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -1
Query: 467 GWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSE 303
GWSN D D+A + S + +D+ E +L D+LK + SE
Sbjct: 66 GWSNLVCSREDHAKSVDVAVLFLGSKLQSSDISKEKQADSTLV-DMLKNSFASSE 119
>07_03_1482 -
26864793-26865043,26865325-26865454,26865564-26865771,
26867529-26867599,26867875-26867884,26869562-26870310
Length = 472
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 222 SPGCSQSFSISGSAEGEIRIFSRVLRSFASGGLALENVVAEATASVS 362
+P +Q ++G AEG R VLR + + L+NV AE +S
Sbjct: 158 TPAATQQ--LNGGAEGRRRSVEEVLREVGADIIGLQNVRAEEERGMS 202
>06_03_0291 +
19198302-19198333,19199218-19199734,19200171-19200383,
19201067-19201111,19201671-19201945,19202041-19202152,
19202453-19202539,19202727-19202963,19204127-19204825
Length = 738
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -2
Query: 496 TGIFSRKLLTAGPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVA 344
TG F+ +L G + L W LD TS V + P S + + E EA A
Sbjct: 564 TGFFNSDVLKGGDFCGEELLTWALDPTS--VSSLPSSTRTVKTMSEVEAFA 612
>03_02_0078 +
5476288-5476626,5477474-5477670,5477750-5477885,
5478055-5478132,5478227-5478280,5478466-5478650,
5478781-5480374,5480506-5480700,5480753-5480904,
5481213-5481486,5481597-5481733,5482219-5482258,
5482773-5483261,5483605-5484168
Length = 1477
Score = 27.5 bits (58), Expect = 9.4
Identities = 24/84 (28%), Positives = 34/84 (40%)
Frame = -1
Query: 464 WSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAA 285
W S+++ + + NS C D + C G+ S SL ND+L E D A
Sbjct: 738 WPKNDSDKVMTQYSLNSDNSKCKIDDS-----CTGETSRSLQNDLLM-----DELVPDTA 787
Query: 284 ENADFSFSGTTDAETLGTARTKLS 213
+ TTD T TKL+
Sbjct: 788 VQKENMIQRTTDLSTSEINYTKLN 811
>02_05_1057 +
33809982-33810366,33810436-33810687,33810727-33810926,
33811021-33811122
Length = 312
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 377 DVVCEGDGSGSLSNDVLKGKSSGSERPQDAA 285
+V C G G G+++ D +G SG R DAA
Sbjct: 120 NVGCIGGGGGNITVDGFRGGGSGGGRGGDAA 150
>01_01_0361 + 2838979-2841745,2841897-2842285
Length = 1051
Score = 27.5 bits (58), Expect = 9.4
Identities = 22/87 (25%), Positives = 37/87 (42%)
Frame = +3
Query: 252 SGSAEGEIRIFSRVLRSFASGGLALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNL 431
SG+ G + L S L+ + E S+ + + DIG G++ +NL
Sbjct: 85 SGNLAGGLPPVIGNLSFLQSLNLSSNELYGEIPPSLGRLRRLEILDIGGNSFSGELPANL 144
Query: 432 QINLFGREVGPAVNNFLEKIPVYLTDT 512
+ + +G A N +IPV L +T
Sbjct: 145 SSCISMKNLGLAFNQLGGRIPVELGNT 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,840,268
Number of Sequences: 37544
Number of extensions: 325110
Number of successful extensions: 1230
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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