Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0492
(632 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38467| Best HMM Match : RVT_1 (HMM E-Value=4.2e-05) 32 0.34
SB_11851| Best HMM Match : IncFII_repA (HMM E-Value=1.4) 32 0.34
SB_13949| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_50208| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_13710| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_7972| Best HMM Match : RVT_1 (HMM E-Value=5.8e-29) 29 2.4
SB_16027| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32) 29 3.1
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29) 29 3.1
SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_38467| Best HMM Match : RVT_1 (HMM E-Value=4.2e-05)
Length = 400
Score = 32.3 bits (70), Expect = 0.34
Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Frame = +3
Query: 282 FSRVLRSFASGGLALENVVAEATASVSLADNIIVSD--IGAAITIGDVKSNLQINLFGRE 455
FS L++ ++ ++ + VS+ II SD + I + +N N+ G+
Sbjct: 12 FSAHLKNAKEIWKGIKQIITLKASPVSIPSKIITSDSVLKDPTAISNAFNNYFTNI-GKN 70
Query: 456 VGPAVNNFLEKIPVYLTDTQPRSAVFWSTSPNSSSTDYCKL 578
+ + + + YL QP S + PN ++ CKL
Sbjct: 71 LANNIPDTAKSFSYYLKKRQPNSFCLFPILPNEIESEICKL 111
>SB_11851| Best HMM Match : IncFII_repA (HMM E-Value=1.4)
Length = 401
Score = 32.3 bits (70), Expect = 0.34
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Frame = +3
Query: 282 FSRVLRSFASGGLALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQINLF---GR 452
FS L++ ++ ++ + VS+ II SD + +T SN N F G+
Sbjct: 84 FSAHLKNVKEIWKGIKQIITLKASPVSIPSKIITSD--SVLTDPTAISNAFNNYFTNIGK 141
Query: 453 EVGPAVNNFLEKIPVYLTDTQPRSAVFWSTSPNSSSTDYCKL 578
+ + + + YL QP S + PN ++ CKL
Sbjct: 142 YLANDIPDTAKSFSYYLKKRQPNSFCLFPILPNEIESEICKL 183
>SB_13949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 31.1 bits (67), Expect = 0.78
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +3
Query: 327 ENVVAEATASVSLADNIIVSD--IGAAITIGDVKSNLQINLFGREVGPAVNNFLEKIPVY 500
+N +A + VS+ II SD + I + +N N+ G+ + + + + Y
Sbjct: 195 DNKMALEASPVSIPSKIITSDSVLTDPTAIFNAFNNYFTNI-GKNLANDIPDTAKSFSYY 253
Query: 501 LTDTQPRSAVFWSTSPNSSSTDYCKL 578
L QP S + PN ++ CKL
Sbjct: 254 LKKRQPNSFCLFPILPNEIESEICKL 279
>SB_50208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 210 PTQLSPGCSQSFSISGSAEGEIR 278
P Q +PGC ++F+I G GE+R
Sbjct: 204 PFQFNPGCKETFNIKGPDLGELR 226
>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1584
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Frame = -1
Query: 416 IANSYCSSDVTDNDV-VCEGDGSGSLSNDVLKGKSSGSERPQDAA-----ENADFSFSGT 255
+ +S+ + TD D + +G+GSGS N + G +GS +++A + AD S
Sbjct: 695 LVDSHTPKEFTDTDAKLLQGEGSGSQHNVMRGGSGAGSGNLKESALQIADQTADTQPSIV 754
Query: 254 TDAETLGTARTKLSRVPT 201
T A + T S++P+
Sbjct: 755 TAANEQNSELTAGSQLPS 772
>SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1339
Score = 29.9 bits (64), Expect = 1.8
Identities = 25/108 (23%), Positives = 42/108 (38%)
Frame = -1
Query: 497 DRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGK 318
D+D +V D S+ + ++E D D D+DV G + +KGK
Sbjct: 173 DKDESFKVQDADSDNDDDNNEMEDDEDEEEELADDDDDDDDVFTPGKEKVPRTPHTVKGK 232
Query: 317 SSGSERPQDAAENADFSFSGTTDAETLGTARTKLSRVPT*LTRRKCRE 174
PQ + ++ S + + T K SR P+ R + R+
Sbjct: 233 HISFRTPQPSKTSSKSSRTSSRTTPARATPSRKSSRTPSQTPRSQQRK 280
>SB_13710| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 819
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +3
Query: 309 SGGLALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQIN 440
SGG L A+A +VSL+D+ S A I++ D++ +LQ++
Sbjct: 665 SGGRTLVQAAADAALAVSLSDH--CSQPSAPISLYDLRDSLQVH 706
>SB_7972| Best HMM Match : RVT_1 (HMM E-Value=5.8e-29)
Length = 382
Score = 29.5 bits (63), Expect = 2.4
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Frame = +3
Query: 282 FSRVLRSFASGGLALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQINLF---GR 452
FS L++ ++ ++ + VS+ II SD + +T SN N F G+
Sbjct: 7 FSAHLKNVKEIWKGVKQIITLKASPVSIPSKIITSD--SVLTDPTAISNAFNNYFTNIGK 64
Query: 453 EVGPAVNNFLEKIPVYLTDTQPRSAVFWSTSPNSSSTDYCKL 578
+ + + + YL Q S + PN ++ CKL
Sbjct: 65 NLANDIPDTAKSFSYYLKKRQSNSFCLFPILPNEIESEICKL 106
>SB_16027| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -1
Query: 332 VLKGKSSGSERPQDAAENADFSFSGTTDAETLGTARTKLSRV 207
+LK SG++R Q E D S+S AET G TK R+
Sbjct: 39 ILKKGMSGNKRRQRNQEVEDSSYSRRARAETRGDRETKRWRI 80
>SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32)
Length = 651
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/81 (28%), Positives = 36/81 (44%)
Frame = -1
Query: 356 GSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTTDAETLGTARTKLSRVPT*LTRRKCR 177
G G LS KGK++ +R + N+D S G+T + T TK V
Sbjct: 563 GGGRLS----KGKTAQKDRTNPRSTNSDASSPGSTKEASKKTKSTKRKAVDNSTDYSNHS 618
Query: 176 ELKSSALTSVTRPEKLMMSDA 114
E ++ TS ++ +M SD+
Sbjct: 619 EFQAKRKTSKSQKAIVMDSDS 639
>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
Length = 1544
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -1
Query: 392 DVTDNDVVCEGDGSGSLS-NDVLKGKSSGSERPQDAAENADFSFSGTTD 249
DV+D D V +GD G+ + +DV G S G + +++ D S +G D
Sbjct: 166 DVSDGDDVSDGDVDGANNCDDVSNGASDGDDVSNGSSDGDDVS-NGAND 213
>SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2123
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +3
Query: 420 KSNLQINLFGREVGPAVNNFLEKIPV-----YLTDTQPRSAVFWSTSPNSSSTDYCKLL 581
+ N+ INL + AV+N LEK V + T+ S+ S +PNSSS + K++
Sbjct: 1724 QDNMGINLLHNQHNIAVSNSLEKANVLNGYFFSIFTKEDSSTAPSLNPNSSSPEMGKII 1782
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,792,994
Number of Sequences: 59808
Number of extensions: 365994
Number of successful extensions: 1286
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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