Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0492
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   1.4  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               23   3.3  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   4.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.3  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   5.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.7  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   7.5  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 257 FR*RRNPHFQPRPEVF 304
           F+  R PH  P P+VF
Sbjct: 445 FKLHRQPHIYPNPDVF 460


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 565 ITVNYSNDTCESKINYVL 618
           I  N S D CE+ +N+++
Sbjct: 119 INANKSTDKCENGLNFII 136


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 349 VASATTFSRASPPEAKDLRTRLKMRISP 266
           +  +T+F R  PP A   R  L  R  P
Sbjct: 378 IGPSTSFPRFIPPNAYRFRPPLNPRFGP 405


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +1

Query: 526 PCSGVRRPTRHQQITVNYSNDTCESKINY 612
           P   ++   RH ++    + D C+ +INY
Sbjct: 200 PMPTLKGDGRHMEVIKIKNFDNCDQRINY 228


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 9/124 (7%)
 Frame = +3

Query: 216 QLSPGCSQSFSISGSAEGEI---RIFSRVLRSFASGGLALENVVA-EATASVSLADNIIV 383
           Q  P  +  F+I+   +G+    +  ++ +   A+  LAL N+V    T  V  A N   
Sbjct: 55  QTGPTHAPIFTIAVQIDGQTYEGKGRTKKMAKHAAAELALRNIVQFRNTPEVHQAINTCQ 114

Query: 384 SDIGAAITI-GDV--KSNLQINLFGR--EVGPAVNNFLEKIPVYLTDTQPRSAVFWSTSP 548
             I        DV  + N  +N F    +     N FLEK PV L +      V+   S 
Sbjct: 115 PSIPLEPDFTSDVTERDNHLVNAFKTLTQEPKNTNKFLEKGPVALINELYPGVVYKCVSD 174

Query: 549 NSSS 560
           N  S
Sbjct: 175 NGES 178


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 365 EGDGSGSLSNDVLKGKSSGSERP 297
           EG G  SL   + +G+ +G+E P
Sbjct: 731 EGSGGDSLRTLLQRGQETGAEWP 753


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 395 SCNNYW 412
           SCNNYW
Sbjct: 100 SCNNYW 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,295
Number of Sequences: 438
Number of extensions: 2955
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)