Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0492
(632 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 30 1.1
At4g39190.1 68417.m05549 expressed protein ; expression support... 30 1.5
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta... 29 2.6
At3g13410.1 68416.m01686 expressed protein 29 2.6
At3g01410.1 68416.m00064 RNase H domain-containing protein low s... 29 2.6
At4g01960.1 68417.m00261 expressed protein 28 4.5
At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F, puta... 28 5.9
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill... 28 5.9
At5g15130.1 68418.m01773 WRKY family transcription factor contai... 27 7.8
At5g11670.1 68418.m01364 malate oxidoreductase, putative similar... 27 7.8
At1g36730.1 68414.m04569 eukaryotic translation initiation facto... 27 7.8
At1g35420.1 68414.m04394 dienelactone hydrolase family protein l... 27 7.8
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -1
Query: 443 EIDLEVRFDIANSY--CSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAEN 279
E +E DI N CS +D+ EG+ L N+ L+ +S+GS+ D A N
Sbjct: 126 EDKVETNDDIKNEEAGCSKRSSDSPKAMEGETRDLLVNEQLRMESAGSQEEGDKAHN 182
>At4g39190.1 68417.m05549 expressed protein ; expression supported
by MPSS
Length = 277
Score = 29.9 bits (64), Expect = 1.5
Identities = 25/91 (27%), Positives = 37/91 (40%)
Frame = -1
Query: 401 CSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTTDAETLGTART 222
C S+ D V E G S D ++ SG E+ +A A S + E
Sbjct: 98 CKSNDLYEDFVLESSRRGGFSQDEMR---SG-EKQSEAENEAKQSITENKAKENEEKQSI 153
Query: 221 KLSRVPT*LTRRKCRELKSSALTSVTRPEKL 129
SRV +T +K + + S ++PEKL
Sbjct: 154 TESRVKKSVTEKKTKRIISEKKVKQSKPEKL 184
>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
domain-containing protein similarity to
TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
DnaJ domain, PF00515: TPR Domain
Length = 1165
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +1
Query: 43 IGELLRAADPLRRDGYAGSWSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYVGT 210
+GE + +D L R GS + G +F G V + K DF+S S+VGT
Sbjct: 218 VGEKI-LSDDLSRKLSVGSMTTDGNHSGDSFQGSVNEKKVHDFNSSCPMNYSFVGT 272
>At3g13410.1 68416.m01686 expressed protein
Length = 321
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 467 GWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSN 336
GWSNF E LE D+A + ++ +DV + + +L N
Sbjct: 70 GWSNFLCSEKKLEQPVDVALVFIGRELLSSDVSSKRNSDPALVN 113
>At3g01410.1 68416.m00064 RNase H domain-containing protein low
similarity to GAG-POL precursor [Oryza sativa (japonica
cultivar-group)] GI:5902445; contains Pfam profile:
PF00075 RNase H
Length = 294
Score = 29.1 bits (62), Expect = 2.6
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Frame = -1
Query: 422 FDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTTDAE 243
F + S+ D + C S + L KSS S+R QD SFS + +
Sbjct: 69 FSVNASHVKDDAFGKLIPCPVQQPSSSQGESLN-KSSPSKRLQDMGSGESGSFSPSPPQK 127
Query: 242 TLGTARTKLSRVP-T*LTRRKCRELKSSAL 156
L L R+P + LTR R+ S +
Sbjct: 128 QLKIENDMLRRIPSSLLTRTPIRQNDSCTI 157
>At4g01960.1 68417.m00261 expressed protein
Length = 236
Score = 28.3 bits (60), Expect = 4.5
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = -1
Query: 452 ASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSS--GSERPQD 291
+ EE DL+V + + ++T N V EGD S ++ N V G+ S GSE+ D
Sbjct: 6 SGEEEDLDVDIEDGRFNETQEITTNLVSAEGD-SENVLNHVWSGRLSFDGSEKSAD 60
>At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative
/ Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
snRNA-associated Sm-like protein LSm6 [Mus musculus]
Length = 91
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -1
Query: 473 VDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSN 336
+DG+ N A E+ + V + N+Y + V N+V+ G+LS+
Sbjct: 44 LDGYMNIAMEQTEEYVNGQLKNTYGDAFVRGNNVLYISTTKGTLSD 89
>At1g44120.1 68414.m05096 C2 domain-containing protein /
armadillo/beta-catenin repeat family protein similar to
CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
profiles PF00514: Armadillo/beta-catenin-like repeat,
PF00168: C2 domain
Length = 2114
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 401 CSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 282
CSS ++ VV EG+G ++ ++ + KS+ E D+ E
Sbjct: 990 CSSHPSNRLVVMEGNGLEIIAENLQRNKSNTQENSSDSEE 1029
>At5g15130.1 68418.m01773 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain; TMV
response-related gene product, Nicotiana tabacum,
EMBL:AB024510
Length = 548
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = -1
Query: 425 RFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFS 267
R I+N+ ++ T+N+ C G S L ++++ +G+ Q +++ FS
Sbjct: 475 RHSISNNIQQTNTTNNNKGCGGYFSSLLMSNIMASNQTGASLDQPSSQLPPFS 527
>At5g11670.1 68418.m01364 malate oxidoreductase, putative similar to
NADP-dependent malic enzyme (EC 1.1.1.40) (NADP-ME)
(SP|P12628) {Phaseolus vulgaris}
Length = 588
Score = 27.5 bits (58), Expect = 7.8
Identities = 26/104 (25%), Positives = 41/104 (39%)
Frame = -1
Query: 422 FDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTTDAE 243
FD+ + Y S + ND + +G S L+ + K G + +GT AE
Sbjct: 287 FDLLSKYSDSHLVFNDDI-QGTASVVLAGLIAAQKVLGKKLADHTFLFLGAGEAGTGIAE 345
Query: 242 TLGTARTKLSRVPT*LTRRKCRELKSSALTSVTRPEKLMMSDAP 111
+ +K + P TR+K + S L +R E L P
Sbjct: 346 LIALKISKETGAPITETRKKIWLVDSKGLIVSSRKESLQHFKQP 389
>At1g36730.1 68414.m04569 eukaryotic translation initiation factor
5, putative / eIF-5, putative similar to SP|P55876
Eukaryotic translation initiation factor 5 (eIF-5) {Zea
mays}; contains Pfam profiles PF02020:
eIF4-gamma/eIF5/eIF2-epsilon, PF01873: Domain found in
IF2B/IF5
Length = 439
Score = 27.5 bits (58), Expect = 7.8
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = -1
Query: 452 ASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENAD 273
AS E EV I Y D+ D DV+ E G S+ VLK + E Q+A ++
Sbjct: 379 ASAEAAKEVALVIKGLY-DEDILDEDVIVEWYNKGVKSSPVLKNVTPFIEWLQNAESESE 437
>At1g35420.1 68414.m04394 dienelactone hydrolase family protein low
similarity to dienelactone hydrolase [Rhodococcus
opacus] GI:23094407; contains Pfam profile PF01738:
Dienelactone hydrolase family
Length = 310
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 139 GRVTDVKADDFSSLHLRRVSYVGTRLNLVLA 231
GRV DV A D S VS+ GTR++ +A
Sbjct: 205 GRVVDVLATDESGYFSTGVSFYGTRIDSAVA 235
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,362,637
Number of Sequences: 28952
Number of extensions: 243599
Number of successful extensions: 834
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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