Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0489
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    41   2e-04
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    29   1.0  
SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.1  
SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity fac...    26   5.4  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    26   7.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   7.1  
SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces ...    25   9.4  
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     25   9.4  

>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
 Frame = +3

Query: 279 NAGYGSVLNLNGEVEMEASIMWGQDLISGAVTLIKEFQHP------ISIARKVLTD---T 431
           NAG GS LN++G+VE EA +M  +  ++ +V      +HP      I   RKV++     
Sbjct: 62  NAGVGSNLNIDGKVECEAGVMDSESGLTASVACCNCCRHPSEACLYILNKRKVMSQHGLV 121

Query: 432 PHSFLGGNGAKLFALEKGFQQVP 500
           P + L GNG +   L    + VP
Sbjct: 122 PPAMLVGNGIEKLLLHSNIKLVP 144



 Score = 37.9 bits (84), Expect = 0.002
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = +1

Query: 625 IDADGHIAVATSTGGINGKMVGRIGDTPLIGGGTYAD--DNVGGIST 759
           +D +G IAV +S+GG+  K  GRIG +P+ G G + +  DN    ST
Sbjct: 182 VDKNGRIAVVSSSGGLLLKPAGRIGSSPIPGHGFWIESFDNKSHSST 228


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 28/91 (30%), Positives = 39/91 (42%)
 Frame = -2

Query: 275 IFIQFHRTTAASTESKALPPFINFS*PALTATLTPSNFP*IRLSEISPAPPCTMIIGFIA 96
           + + F  T A S      PP + FS P L    +  NFP      ++     T I+G I 
Sbjct: 581 LLMHFEPTYALSRLVSFAPPEVTFSLPELDFLTSVFNFP------LALRNTATRILGII- 633

Query: 95  PLSMTKANKTHIEMNMICFNIVLESNARIHN 3
            LS TK +    E+   CF I+  SN +  N
Sbjct: 634 -LS-TKDSTRISEVLSSCFTIISTSNNKNDN 662


>SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 133

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 101 IAPLSMTKANKTHIEMNMICFNIVLESNARIHN 3
           + P++  KANK H+ M   CF+  + +   I N
Sbjct: 84  LKPMATKKANKMHVFMQAACFHFRIATMTVIGN 116


>SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +3

Query: 279 NAGYGSVLNLNGEVEMEASIMWGQDLISGAV---TLIKEF 389
           + G+  +LNLNG    ++S +  Q+L+  A+    L+KE+
Sbjct: 18  STGFVKILNLNGRSSYKSSYLVNQNLMDEALVKSNLLKEY 57


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -2

Query: 227 ALPPFINFS*PALTATLTPSNFP*IRLSEISPAPPCTMIIGFIAPLSMTKANKTHIEMN 51
           ALPPF + +    T T TPSN   I  S+  P+P    ++  + P     +  T   +N
Sbjct: 247 ALPPFPDTN---STLTYTPSNSQSIYSSQSQPSPYSRPLLSSVHPNLPPGSQSTPANLN 302


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 215  FINFS*PALTATLTPSNFP*IRLSEISPAPP 123
            F ++S   LTAT  P N    +LS++  APP
Sbjct: 1415 FPDYSQTVLTATFNPHNQNITQLSQLQLAPP 1445


>SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +3

Query: 36  VKTNHIHFNMCFICFSH*EWSNEANYHRAWRGW*YF*ESY 155
           V   H+H  +CF+C    +      + +++    YF ESY
Sbjct: 166 VDAKHVHCPVCFLCSKDEDPEEVDAWKKSFENSPYFSESY 205


>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 175 VKVAVRAGYEKLMNG-GSALDSVEAAVVLWNW 267
           VKVA+      L++G GSAL+   AA + +NW
Sbjct: 104 VKVALLIDAFSLISGLGSALNQSLAAAIAYNW 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,123,225
Number of Sequences: 5004
Number of extensions: 64845
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)