Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0489
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1391 + 33195508-33195903,33197506-33197592,33197678-33198196 71 1e-12
03_05_0219 - 22059388-22059729,22059838-22059999 65 7e-11
04_04_0711 - 27468045-27468264,27468831-27468935,27469431-274694... 50 3e-06
04_04_1628 + 34874688-34874915,34875182-34875232,34875532-348756... 40 0.002
03_05_0217 - 22056301-22056648 36 0.049
03_01_0024 - 214141-215097 35 0.064
02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580 31 1.0
11_06_0148 + 20631949-20632338,20632838-20633044,20633168-206332... 29 5.6
07_03_1251 + 25186333-25188027,25188113-25188208,25188292-251883... 29 5.6
06_02_0256 + 13528331-13528765 28 7.4
09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,627... 28 9.8
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 28 9.8
02_05_0290 - 27571504-27572119,27572211-27572279,27573205-275733... 28 9.8
>04_04_1391 + 33195508-33195903,33197506-33197592,33197678-33198196
Length = 333
Score = 70.9 bits (166), Expect = 1e-12
Identities = 36/80 (45%), Positives = 53/80 (66%)
Frame = +3
Query: 258 MELDENFNAGYGSVLNLNGEVEMEASIMWGQDLISGAVTLIKEFQHPISIARKVLTDTPH 437
+E D FN+G GS L G VEMEASIM G+ GAV+ + ++P+S+AR V+ +PH
Sbjct: 58 LESDPFFNSGRGSALTRLGTVEMEASIMDGRGRRCGAVSGVSTVKNPVSLARLVMDKSPH 117
Query: 438 SFLGGNGAKLFALEKGFQQV 497
S+L +GA+ FA ++G + V
Sbjct: 118 SYLAFDGAEQFARDQGLEVV 137
Score = 63.3 bits (147), Expect = 2e-10
Identities = 26/39 (66%), Positives = 30/39 (76%)
Frame = +1
Query: 616 CGTIDADGHIAVATSTGGINGKMVGRIGDTPLIGGGTYA 732
C +D+ GH A ATSTGG+ KM GRIGD+PLIG GTYA
Sbjct: 206 CAVVDSSGHTAAATSTGGLMNKMTGRIGDSPLIGSGTYA 244
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +1
Query: 112 IIVHGGAG---DISESRIQGKFDGVKVAVRAGYEKLMNGGSALDSVEAAV 252
I +HGGAG ++ E R + + ++ G + L +G +ALD VEA V
Sbjct: 6 IAIHGGAGVDPNLPEHRQEEAKRVLARCLQVGVDALRSGAAALDVVEAVV 55
>03_05_0219 - 22059388-22059729,22059838-22059999
Length = 167
Score = 64.9 bits (151), Expect = 7e-11
Identities = 32/70 (45%), Positives = 47/70 (67%)
Frame = +3
Query: 273 NFNAGYGSVLNLNGEVEMEASIMWGQDLISGAVTLIKEFQHPISIARKVLTDTPHSFLGG 452
++NAG GSVL +G VEMEA++M G L GAV+ + + +S+AR V+ TPH +L
Sbjct: 63 HYNAGVGSVLTADGTVEMEAAVMDGNTLRCGAVSGLSTVVNAVSLARLVMEKTPHIYLAF 122
Query: 453 NGAKLFALEK 482
+GA+ FA E+
Sbjct: 123 DGAEAFAREQ 132
>04_04_0711 -
27468045-27468264,27468831-27468935,27469431-27469489,
27469566-27470009,27470123-27470187,27470871-27471066,
27471429-27471590
Length = 416
Score = 49.6 bits (113), Expect = 3e-06
Identities = 23/46 (50%), Positives = 26/46 (56%)
Frame = +1
Query: 625 IDADGHIAVATSTGGINGKMVGRIGDTPLIGGGTYADDNVGGISTT 762
ID G IA TST G K+ GR+GD P+ G YADD VG T
Sbjct: 287 IDKMGRIAAGTSTNGATFKIPGRVGDGPIPGSSAYADDEVGACGAT 332
Score = 39.1 bits (87), Expect = 0.004
Identities = 23/67 (34%), Positives = 34/67 (50%)
Frame = +3
Query: 285 GYGSVLNLNGEVEMEASIMWGQDLISGAVTLIKEFQHPISIARKVLTDTPHSFLGGNGAK 464
G G + NGE ++A IM G + GAV ++ + I A+ V+ T H+ L G A
Sbjct: 121 GPGGSPDENGETTLDALIMDGTTMEIGAVAAMRYVKDGIRAAKLVMDHTEHTLLVGEKAT 180
Query: 465 LFALEKG 485
FA+ G
Sbjct: 181 SFAISMG 187
>04_04_1628 +
34874688-34874915,34875182-34875232,34875532-34875652,
34875739-34875788,34876395-34876524,34877007-34877170,
34877262-34877300,34877301-34877464,34877808-34877931,
34878002-34878103,34878208-34878297
Length = 420
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/51 (45%), Positives = 30/51 (58%)
Frame = +3
Query: 258 MELDENFNAGYGSVLNLNGEVEMEASIMWGQDLISGAVTLIKEFQHPISIA 410
+E D NAG GS L +G VE +ASIM G GAV ++ ++PI IA
Sbjct: 92 LEDDPITNAGRGSNLTESGHVECDASIMDGSTTTFGAVGAVQGVKNPIQIA 142
>03_05_0217 - 22056301-22056648
Length = 115
Score = 35.5 bits (78), Expect = 0.049
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +1
Query: 682 MVGRIGDTPLIGGGTYAD 735
M GRIGDTP+IG GTYA+
Sbjct: 1 MAGRIGDTPVIGAGTYAN 18
>03_01_0024 - 214141-215097
Length = 318
Score = 35.1 bits (77), Expect = 0.064
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 616 CGTID-ADGHIAVATSTGGINGKMVGRIGDTPLIGGGTYADDNVGG 750
CG +D ADG + GG NGK G +G + GG D VGG
Sbjct: 137 CGGVDRADGKVDGNGVGGGGNGKKGGEVGGVEVEGGEAEGDGEVGG 182
>02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580
Length = 726
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 257 RTTAASTESKALPPFINFS*PALTATLTPSNFP*IRLSEISPAPPC 120
R+ ++ + A+ P I S P T P NFP + +++++P P C
Sbjct: 288 RSKSSPAKKTAVSPHIPSS-PRNTVQSNPQNFPSLAMADLNPTPQC 332
>11_06_0148 +
20631949-20632338,20632838-20633044,20633168-20633267,
20633478-20633560,20633656-20633712,20633790-20633942,
20634016-20634094,20634279-20634427,20634541-20634675,
20634783-20634896,20635065-20635175,20635338-20635373,
20635675-20635884
Length = 607
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Frame = -3
Query: 586 PSNFCSLVIAFVQEIVKCLFSAFAYQDSG-----GTCWKPFSSANSL 461
P + LV + V L + F ++ G GTCWK F+S NSL
Sbjct: 161 PGDLSVLVHREYDDFVTELVNKFPHEKEGILKFYGTCWKIFNSLNSL 207
>07_03_1251 + 25186333-25188027,25188113-25188208,25188292-25188381,
25188473-25188577,25188764-25188823,25188931-25188993,
25189077-25189172,25189982-25190146,25191104-25191277,
25191387-25191452,25191556-25191654,25192714-25192857,
25193312-25193401
Length = 980
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +3
Query: 264 LDENFNAGYGSVLNLNGEVEMEASIMW---GQDLISGAVTLIKEFQHPISIARKVLTDTP 434
LD++FN G + L GE+ M +M+ G++ + VT ++E P +A +
Sbjct: 892 LDKSFNFRDGISIALFGEIMMAQKVMYERFGENFVVNFVTKLREAHCPPDLAEQY----- 946
Query: 435 HSFLGGNGAKLF 470
+ L GN K F
Sbjct: 947 YQKLQGNDIKAF 958
>06_02_0256 + 13528331-13528765
Length = 144
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 604 GNSRCGTIDADGHIAVATSTGGINGKMVGRIGDTPLIGGGTYADD 738
GN RC I DG + G ++ K+ GD L+G Y DD
Sbjct: 43 GNGRCEAICVDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDD 87
>09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,
6272359-6272511,6273381-6273586,6274280-6274733,
6276573-6276610,6276923-6277046,6277184-6277246,
6277350-6277412,6277526-6278152,6278267-6278294,
6278373-6278413,6278689-6278851,6278987-6279039,
6279217-6279262,6279373-6279444,6279578-6279741,
6279968-6280099,6280249-6280565,6280721-6280892,
6281009-6281107,6281275-6281349,6281446-6281504,
6281647-6281836,6281982-6282020
Length = 1255
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 13 RAFD-SKTMLKQIIFISICVLFALVIESGAMKPIIIVHGGAGDISESRIQGKFDGVKVAV 189
R FD +K++ + + I + + + S + P + + +S ++ +GKFD V
Sbjct: 873 RIFDGTKSLSLRFLIPKILEIVTIALNSNSFHPNVRTYNNLKTLSNNKDKGKFDAEFVRK 932
Query: 190 RAGYEKLMN 216
RA ++ L N
Sbjct: 933 RA-FQDLTN 940
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 637 GHIAVATSTGGINGKMVGRIGDTPL 711
GH+AVA +GG+ G R+ PL
Sbjct: 18 GHVAVAAESGGVGGGSARRVLHQPL 42
>02_05_0290 -
27571504-27572119,27572211-27572279,27573205-27573332,
27573854-27573976
Length = 311
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 122 CTMIIGFIAPLSMTKANKTHIEMNMICFNI 33
C I + P+ MTKAN HI + ++ ++I
Sbjct: 108 CNSIPSLLQPVQMTKANIDHISLVLLTWHI 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,530,842
Number of Sequences: 37544
Number of extensions: 440140
Number of successful extensions: 1129
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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