Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0488
         (802 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    27   0.23 
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    25   0.53 
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    23   2.1  

>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -2

Query: 579 SNKNTLFVKS--NF*HFITFFPMRLNLNNNAL*FT-SVR*KITRIIRISLL 436
           S KN  ++K    F HFI  FP+ +N+  N L +  + +    R++ I LL
Sbjct: 16  SMKNFKYLKVLVTFAHFICLFPITINIRKNGLNYNFTKKCYFLRMVLIDLL 66


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 188 VHVLVLAFIYTFSSYPGGLNF 126
           VH LVLAF+Y+F  +  G+ F
Sbjct: 136 VH-LVLAFLYSFDLFANGITF 155


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 382 SRWLKCLTNYEAGEISE 432
           S W+  L NY   EISE
Sbjct: 47  SAWICALVNYNVSEISE 63


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,890
Number of Sequences: 336
Number of extensions: 4017
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)