Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0488
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    29   0.77 
SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr...    28   1.8  
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    26   5.4  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    26   5.4  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    26   5.4  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   9.5  

>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 380  STIEHLKKFYTENIETKHNWEFYSELKCYYVY 285
            S ++ + K  TE +  K  WEFY+E+    +Y
Sbjct: 1534 SALDTVPKVITEGVNLKAIWEFYNEISMNDIY 1565


>SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 115

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = -3

Query: 350 TENIETKHNWEFYSELKCYY-----VYMISFV*CREIVSQN 243
           TEN   K NW     +KC++     VY++  V CR ++  N
Sbjct: 19  TENHVKKKNWRCGKGIKCFFKPSDQVYLVGQVDCRFLLHHN 59


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 368 HLKKFYTENIETKHNWEFYSELKCYYVYM 282
           HL+ F    +ET   W F SE+K  Y ++
Sbjct: 246 HLQIFQKVQLETAKRWTFESEIKRPYFHV 274


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 503 FKFNLIGKNVIKCQKLDFTNNVFLLLRI*LFTIQANSNLKLK 628
           F + ++ +++ +C  LD TN+VF L ++        S+ KLK
Sbjct: 215 FFYPILMEHIKRCTSLDLTNSVFSLSKVNTDCAILTSSGKLK 256


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 495 HYYLNLISLEKML*NVK-NWILRIMYFYCCVYNY 593
           HY +    L K +  V  +W + I++ +CC YNY
Sbjct: 158 HYIMQTFPLGKFVGLVTFSWSV-IVFLHCCAYNY 190


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 218 YQYNWDDDNFEKLFLDIIRMISY 286
           Y Y  DD+N E  F+ +  +I Y
Sbjct: 306 YMYKEDDENLESYFMMVALLIKY 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,062,526
Number of Sequences: 5004
Number of extensions: 60817
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)