Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0488
         (802 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0282 - 16749358-16749445,16749640-16749695,16749965-167501...    30   2.5  
12_01_0744 - 6688631-6688660,6689032-6690603,6690697-6691497           29   3.3  
05_06_0214 - 26425100-26425922,26426008-26426058,26426183-264262...    29   5.7  
11_06_0180 + 20962420-20962528,20962618-20962699,20962831-209629...    28   9.9  
08_02_0137 - 13049872-13050893,13051022-13051175                       28   9.9  
01_06_1072 + 34295227-34295316,34295410-34295583,34296268-342963...    28   9.9  

>12_02_0282 -
           16749358-16749445,16749640-16749695,16749965-16750137,
           16750768-16750924,16751279-16751422,16751959-16752134,
           16753024-16753045,16753845-16753937,16754259-16754431,
           16754550-16754760
          Length = 430

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +3

Query: 3   ARDALEAASLHPAKALGIDDKKGNLNFDSDADFVILHP 116
           A   L+ A+++ AKA+  DD+ G+L     AD V+++P
Sbjct: 354 AETVLKMATINGAKAVLWDDEIGSLEVGKKADMVVVNP 391


>12_01_0744 - 6688631-6688660,6689032-6690603,6690697-6691497
          Length = 800

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 78  NFDSDADFVILHPKTLKVQSTWIAGECVYKCQN*DMNKTNILYFKNNISTI 230
           +FD    FV L   +  +  TW  GEC++ C N D     +L    N+  +
Sbjct: 476 SFDDPGMFVQLKLISWPMHDTW--GECLFNCANEDQEAQKVLVNGRNLQGV 524


>05_06_0214 -
           26425100-26425922,26426008-26426058,26426183-26426256,
           26426344-26426441,26426547-26426671,26426724-26426957,
           26426992-26427037,26427101-26427152,26427331-26427367,
           26427521-26427637,26428287-26428352,26428439-26428518,
           26429102-26429311,26429650-26429739,26430093-26430182,
           26430280-26430411,26430876-26431094,26431203-26431286,
           26431543-26431656,26431857-26431914,26432535-26432602,
           26432847-26432962,26433495-26433574,26433839-26433912
          Length = 1045

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +3

Query: 60  DKKGNLNF-DSDADFVILHPKTLKVQS-TWIAGECVYKCQN*DMNKTNILYFKNNISTIG 233
           D KG +   D+  D+ IL P   +V    W+  +  Y C     +  +IL+   N S+ G
Sbjct: 292 DLKGKIKLEDAGFDWKILGPDVQEVDYIAWVCDQDAYACSGQKCSAQSILFMHKNWSSSG 351

Query: 234 TM 239
            +
Sbjct: 352 LL 353


>11_06_0180 + 20962420-20962528,20962618-20962699,20962831-20962948,
            20963024-20963062,20963181-20963343,20963706-20963921,
            20964039-20964116,20964244-20964500,20964544-20964575,
            20964815-20965197,20965262-20965831,20966250-20966343,
            20966365-20966541,20966761-20966963,20968244-20968301,
            20969126-20969381,20969553-20969789
          Length = 1023

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 120  TLKVQSTWIAGECVYKCQN*DMN 188
            +LKVQ TW+AG   Y+C   +M+
Sbjct: 1001 SLKVQFTWLAGAQSYECARGEMD 1023


>08_02_0137 - 13049872-13050893,13051022-13051175
          Length = 391

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 185 HVLVLAFIYTFSSYPGGLNFQCFRVKY 105
           H+L L F+YT      G++F+ FR ++
Sbjct: 65  HLLTLQFLYTLKEMEDGISFRFFRKEH 91


>01_06_1072 +
           34295227-34295316,34295410-34295583,34296268-34296322,
           34296410-34296679,34296881-34297092,34297276-34297396,
           34297674-34297761,34297834-34297912,34298092-34298179,
           34298312-34298352,34298477-34298529,34298623-34298779,
           34298862-34299053
          Length = 539

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 9   DALEAASLHPAKALGIDDKKGNLNFDSDADFVILHPK 119
           D +   S   AK   I  +KG +   SDAD +IL+P+
Sbjct: 415 DYVRVTSTECAKIFNIYPRKGAILEGSDADIIILNPE 451


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,160,000
Number of Sequences: 37544
Number of extensions: 297963
Number of successful extensions: 472
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)