Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0488
         (802 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12690| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   3e-06
SB_15026| Best HMM Match : Amidohydro_1 (HMM E-Value=0.022)            30   1.9  
SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_5165| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_12690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 54

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 24/48 (50%), Positives = 33/48 (68%)
 Frame = +3

Query: 9   DALEAASLHPAKALGIDDKKGNLNFDSDADFVILHPKTLKVQSTWIAG 152
           +A+E A+LHPA+ L I  +KG L+F SDAD + L  + L VQ+T I G
Sbjct: 6   EAIEGATLHPAQLLNIQHRKGTLDFGSDADLIFLDDQ-LNVQATLIGG 52


>SB_15026| Best HMM Match : Amidohydro_1 (HMM E-Value=0.022)
          Length = 217

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 6   RDALEAASLHPAKALGIDDKKGNLNFDSDADFVILHP 116
           +DA   A+L  +K LG++ K GN     D D V++ P
Sbjct: 127 KDAFYYATLGGSKVLGLEKKIGNFQVGKDFDAVLVDP 163


>SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1487

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 192 TNILYFKNNISTIGTMIILRNYFSTLYE*YHIYVITFK 305
           T ++YF+ ++S I   +    +FS  +    I VIT+K
Sbjct: 610 TGVVYFRQDVSNIDLFVFFSVFFSVFFLVLSICVITWK 647


>SB_5165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 9   DALEAASLHPAKALGIDDKKGNLNFDSDADFVILHP 116
           D +      P+K   +  +KG ++   DADFVI  P
Sbjct: 309 DVVRVLCEQPSKLCSLQHRKGMISVGKDADFVIWDP 344


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,238,150
Number of Sequences: 59808
Number of extensions: 395383
Number of successful extensions: 703
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)