Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0488
         (802 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26190.1 68417.m03770 expressed protein                             29   2.7  
At5g12200.1 68418.m01431 dihydropyrimidinase / DHPase / dihydrop...    28   8.3  

>At4g26190.1 68417.m03770 expressed protein
          Length = 1067

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
 Frame = -3

Query: 404  VRHFSHRLSTIEHLKKFYTEN-------IETKHNWEFYSE 306
            +R +  RL+  E+++KF  EN        ET  +WEFYS+
Sbjct: 1022 LRKYLERLADAENVQKFVAENPFGQTAITETHESWEFYSK 1061


>At5g12200.1 68418.m01431 dihydropyrimidinase / DHPase /
           dihydropyrimidine amidohydrolase / hydantoinase (PYD2)
           identical to dihydropyrimidine amidohydrolase (PYD2)
           [Arabidopsis thaliana] GI:28194047; similar to SP|Q9EQF5
           Dihydropyrimidinase (EC 3.5.2.2) (DHPase) (Hydantoinase)
           (DHP) {Mus musculus}; contains Pfam profile PF01979:
           Amidohydrolase family
          Length = 531

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 3   ARDALEAASLHPAKALGIDDKKGNLNFDSDADFVILHPKT 122
           A D +   S   A+   I  +KG +   SDAD +IL+P +
Sbjct: 404 ATDYVRITSTECARIFNIYPRKGAILAGSDADIIILNPNS 443


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,859,823
Number of Sequences: 28952
Number of extensions: 275951
Number of successful extensions: 458
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)