Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0487
         (782 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813...    30   2.4  
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543...    30   2.4  
11_04_0454 - 17895935-17896093,17896878-17896911,17897114-178972...    29   3.2  
08_02_1249 - 25584175-25584325,25584520-25584625,25584801-255849...    29   3.2  
12_01_0983 - 9979572-9980570,9980878-9981544,9982864-9983217,998...    29   5.5  
08_02_1267 + 25728324-25728407,25728436-25728502,25728753-257288...    29   5.5  
01_06_0298 + 28301032-28302408                                         29   5.5  
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704     28   9.6  

>08_02_0200 -
           14179389-14180488,14180575-14180736,14180983-14181383,
           14182078-14182272,14182980-14183094,14183180-14183428,
           14184032-14184093,14184335-14184435,14184701-14184815,
           14185211-14185302,14187619-14187777
          Length = 916

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 195 LKGSGSW*EQYQRTVGTIDSRWV 127
           +KG   W  +YQR  GTID  W+
Sbjct: 701 VKGLDEWPNEYQRQYGTIDLYWI 723


>01_02_0116 -
           11252220-11253313,11253398-11253559,11253977-11254306,
           11254328-11254377,11255195-11255389,11255532-11255625,
           11255713-11255961,11256831-11256892,11257434-11257534,
           11257766-11257880,11258384-11258475,11259197-11259333,
           11259721-11259760
          Length = 906

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 195 LKGSGSW*EQYQRTVGTIDSRWV 127
           +KG   W  +YQR  GTID  W+
Sbjct: 693 VKGLDEWPNEYQRQYGTIDLYWI 715


>11_04_0454 -
           17895935-17896093,17896878-17896911,17897114-17897252,
           17897487-17897561,17897666-17897945
          Length = 228

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 655 RRQGHPSQYCRSRGHQPGPNRR 590
           RR+ H  ++ R RG QP PNRR
Sbjct: 27  RRRRHHQRHRRRRGGQPAPNRR 48


>08_02_1249 -
           25584175-25584325,25584520-25584625,25584801-25584963,
           25585047-25585241,25585286-25585548,25585654-25585774
          Length = 332

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 589 RICYQSRRDH-DPCTVPCSFLCWSQ*VRLVEVAVRYTAALNGS 464
           + CY +  DH  P  +  SFL W+  +R   VA    +A+NG+
Sbjct: 97  KACYTNCEDHFHPAIMRLSFLSWNSDLRCHLVAAVLDSAINGT 139


>12_01_0983 -
           9979572-9980570,9980878-9981544,9982864-9983217,
           9983334-9983668
          Length = 784

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 565 DHDPCTVPCSFLCWSQ*VRLVEVAVRYTAALNGSSPSEQINK 440
           +H   ++ C F  WS  V   E AVR  A+ +   P+ +IN+
Sbjct: 725 EHLEVSINCHFATWSG-VEAAEAAVRNAASAHPGCPTVEINR 765


>08_02_1267 +
           25728324-25728407,25728436-25728502,25728753-25728828,
           25729388-25729450,25729640-25729896,25731299-25731440,
           25731524-25732017,25732398-25732536,25733805-25733876,
           25733960-25734040,25734677-25734843,25734942-25735147,
           25735301-25735427,25735515-25735639
          Length = 699

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -2

Query: 532 LCWSQ*VRL-VEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNSTLLDVWAEVDGM 365
           L WS    + V++A ++   L  +   E I  N L  +D +LDN+TL+  ++ +  M
Sbjct: 289 LSWSSDSSMNVDIATKFFVVLYFAEV-EAIQGNALRQFDIILDNNTLVSAFSPISMM 344


>01_06_0298 + 28301032-28302408
          Length = 458

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 117 EVFLPILNQWFQQCAGIVLTNYHYLSTATCF-HGEFYDPAYRRIIAGLP 260
           +V LP    W Q CA ++   YHY+ +   F  G+  D +    I GLP
Sbjct: 131 DVGLPCAILWIQSCA-VLSVYYHYVYSLAAFPSGDEADSSGAVTIPGLP 178


>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
          Length = 748

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +1

Query: 331 LRQGCEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYF 441
           L  GC+    N C   R K+P  C  P  C NTPG F
Sbjct: 293 LLDGCQD--INECEDSRFKYP--CSVPGTCINTPGGF 325


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,594,927
Number of Sequences: 37544
Number of extensions: 561712
Number of successful extensions: 1536
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1535
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)