Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0487
(782 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.60
SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 1.4
SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39) 30 1.8
SB_43527| Best HMM Match : Trypsin (HMM E-Value=0) 30 2.4
SB_21575| Best HMM Match : Trypsin (HMM E-Value=0) 30 2.4
SB_56319| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_5845| Best HMM Match : Ribosomal_S27 (HMM E-Value=8.3) 29 3.2
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_37182| Best HMM Match : DUF225 (HMM E-Value=1) 29 5.6
SB_30797| Best HMM Match : Notch (HMM E-Value=2.4e-07) 28 7.4
SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0) 28 9.8
SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_30267| Best HMM Match : Trypsin (HMM E-Value=0) 28 9.8
>SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 31.9 bits (69), Expect = 0.60
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = +1
Query: 493 RQPPQVELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQN--- 663
R P Q L + + ENCR +Y V + CAG R+ N D G P ++
Sbjct: 906 RHPQQAMLPIASHENCRRKY---GDVSSTAHLCAGEARSDAAGGCNGDSGGPLVCEDNGS 962
Query: 664 -ALVGIVSFG 690
L G VS+G
Sbjct: 963 WFLHGAVSYG 972
>SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 907
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -2
Query: 652 RQGHPSQYCRSRGHQPGPNRR--RICYQSRRD 563
RQG P +YCRS Q GP RR R Y +R+
Sbjct: 338 RQGTPDEYCRSSVKQIGPFRRFERRGYSKKRN 369
>SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)
Length = 351
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 673 LLAHFGRRQGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 545
L+ H G R +PS+ C + P +++ YQS+ HD C +
Sbjct: 162 LICH-GCRGINPSKVCAACNGDFAPGEKKVGYQSKTFHDKCFI 203
>SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 366
Score = 29.9 bits (64), Expect = 2.4
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +2
Query: 308 HPEFSEENYDKDVSIVRVTHAIHF 379
HP +S ++YD D++++R+ + F
Sbjct: 199 HPHYSPDSYDSDIALIRLAQPVTF 222
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +1
Query: 520 VTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQNAL 669
+ + + CR+ + D +VT N FCAG + D D G P N L
Sbjct: 273 IVDIQTCRKAHP--DYIVTANMFCAGFENSSRGDACQGDSGGPFSVDNPL 320
>SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 696
Score = 29.9 bits (64), Expect = 2.4
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +1
Query: 505 QVELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQN----ALV 672
Q L + + +C+ +Y G V + CAG R+G N D G P ++ L
Sbjct: 225 QAMLPIASHNDCKNKYYG---VSSTAHLCAGEARSGASGGCNGDSGGPLVCEDNGRWYLH 281
Query: 673 GIVSFGK 693
G VS+GK
Sbjct: 282 GAVSYGK 288
>SB_56319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Frame = +2
Query: 212 WRILRS---CIPSHYRWTSRRSEPGE 280
WRILR+ C HYR+ R EPGE
Sbjct: 99 WRILRTKTTCPVRHYRFNRRVQEPGE 124
>SB_5845| Best HMM Match : Ribosomal_S27 (HMM E-Value=8.3)
Length = 265
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Frame = +2
Query: 212 WRILRS---CIPSHYRWTSRRSEPGE 280
WRILR+ C HYR+ R EPGE
Sbjct: 63 WRILRTKTKCPVRHYRFNRRVQEPGE 88
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 520 VTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQNA 666
V N C++ Y+ VT N CAG + RD N D G F ++
Sbjct: 1321 VVNHNACKKAYENETWPVTSNMLCAG-YKNKSRDSCNRDSGGGFVFYDS 1368
>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
Length = 1282
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +1
Query: 175 PTTTTFQLLPVSMENSTILHTVALSLDFPSQ*AR*N---ILCSLCC*PSRIL*GELRQGC 345
P+ ++P++ + H V +S+ FPS+ A + I CS C P R+L C
Sbjct: 747 PSRAHVDVIPIACSCRCVPHHVLMSMCFPSR-AHVDVFPITCSCRCVPHRVLMSMCSPSC 805
Query: 346 EH 351
H
Sbjct: 806 AH 807
>SB_30797| Best HMM Match : Notch (HMM E-Value=2.4e-07)
Length = 778
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/60 (21%), Positives = 26/60 (43%)
Frame = -3
Query: 612 TSPDQTGAEFVISHDAIMTLVLFPAVFFVGHNEFDLWRLPSDTLPP*TVVPHPSRSTKIP 433
+S +QT + + L ++P + + W++P+ TLP T + K+P
Sbjct: 213 SSDNQTTLVPTVVKPEFLPLTVYPVIINDNDRAINYWQIPNSTLPRPTWIALSQEEYKVP 272
>SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 473
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 102 SLVQIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFY 224
+LV +E + P N+W ++ +LT Y STA G+ Y
Sbjct: 111 NLVSMERYDPSTNEWEEEAVAPMLTARKYFSTAV-LDGKLY 150
>SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 27.9 bits (59), Expect = 9.8
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -2
Query: 505 VEVAVRYTAALNGSSPSEQI-NKNTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILVVI 329
+++ V Y AA+ S Q N+N L Y + D + A + M SY+ + +
Sbjct: 303 MKIKVNYVAAVQDESTYSQFYNENNLKYEEEFTDVLENIKTRARIVIMVTSYNMAVEGMH 362
Query: 328 LLREFGMVNSK 296
L + G++N +
Sbjct: 363 LAKNRGLINGE 373
>SB_30267| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 282
Score = 27.9 bits (59), Expect = 9.8
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 13/75 (17%)
Frame = +1
Query: 505 QVELIVTNKENCREQYKGHDRV--------VTDNKFCAGLVRAGGRDYDNTDLGAPAFFQ 660
Q +L V + C E++ G + VT+ CAG G++ N D G P +
Sbjct: 176 QADLRVVSNRACSERHMGSKNMRLENGTWRVTETMLCAGDAGKTGKNGCNGDSGGPFVCR 235
Query: 661 N-----ALVGIVSFG 690
N L G+VS+G
Sbjct: 236 NTAGQWVLQGVVSWG 250
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,745,306
Number of Sequences: 59808
Number of extensions: 638559
Number of successful extensions: 1540
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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